Factsheet for VIT_00s0271g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0271g00070.t01	Wine grape	mitochondrion	99.02	53.3
PGSC0003DMT400071165	Potato	extracellular	26.96	31.25
VIT_00s0274g00040.t01	Wine grape	mitochondrion	52.45	28.01
VIT_00s0271g00080.t01	Wine grape	mitochondrion	47.55	26.72
PGSC0003DMT400055889	Potato	plastid	42.65	22.14
Solyc02g079830.1.1	Tomato	mitochondrion	43.14	22.0
GSMUA_Achr10P...	Banana	mitochondrion	42.16	21.45
Solyc02g079820.2.1	Tomato	cytosol, plastid	32.35	21.09
VIT_00s0271g00050.t01	Wine grape	mitochondrion	22.55	20.26
HORVU3Hr1G077400.1	Barley	cytosol	37.75	20.1
CDY43368	Canola	plastid	43.14	20.05
CDY24210	Canola	plastid	42.65	19.86
EES01579	Sorghum	mitochondrion	41.67	19.81
EES01580	Sorghum	mitochondrion	42.16	19.59
PGSC0003DMT400055888	Potato	mitochondrion	35.78	19.36
Zm00001d012606_P001	Maize	mitochondrion	41.67	18.76
Os01t0785700-01	Rice	mitochondrion	39.22	18.43
Bra039372.1-P	Field mustard	cytosol, plastid	43.14	18.41
TraesCS3A01G324300.1	Wheat	plastid	38.24	18.06
VIT_04s0023g01460.t01	Wine grape	mitochondrion	35.78	17.63
TraesCS3A01G324200.1	Wheat	plastid	39.22	17.58
TraesCS3B01G353300.1	Wheat	plastid	35.29	17.22
VIT_10s0116g00030.t01	Wine grape	plastid	33.33	17.17
TraesCS3D01G317700.1	Wheat	plastid	39.22	16.95
EER95222	Sorghum	mitochondrion	40.69	16.84
TraesCS3B01G361800.1	Wheat	plastid	35.78	16.63
TraesCS3A01G324500.1	Wheat	plastid	38.24	16.49
TraesCS3A01G331700.1	Wheat	plastid	34.31	16.39
TraesCS3D01G325200.1	Wheat	plastid	35.78	16.26
AT3G13150.1	Thale cress	plastid	43.63	16.15
TraesCS3A01G331600.1	Wheat	plastid	35.78	15.9
HORVU3Hr1G077440.2	Barley	mitochondrion	38.24	15.89
HORVU6Hr1G019320.1	Barley	plastid	35.29	15.52
VIT_09s0002g06540.t01	Wine grape	mitochondrion	31.86	15.4
TraesCS3D01G317800.1	Wheat	plastid	37.25	15.11
TraesCS3B01G353500.1	Wheat	plastid	37.25	15.11
VIT_01s0010g01460.t01	Wine grape	mitochondrion	28.43	15.03
VIT_10s0116g00090.t01	Wine grape	mitochondrion	11.27	9.02

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:CCB62877	ProteinID:CCB62877.1	UniProt:F6I7F9	EMBL:FN596782
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF1052	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000210ABDF	ArrayExpress:VIT_00s0271g00040	EnsemblPlantsGene:VIT_00s0271g00040	EnsemblPlants:VIT_00s0271g00040.t01	:	:

Description

No Description!

Coordinates

chrUn:-:20106152..20106839

Molecular Weight (calculated)

23174.1 Da

IEP (calculated)

4.571

GRAVY (calculated)

-0.260

Length

204 amino acids

Sequence
(BLAST)

001: MGSLDSALSV LDEMEKVGLE PDLITFNTLL NAFYQNGSYA DGEKIWDLMK KNNVAPNVRS YNAKLRGVIS ENRMSEAVEL IDEMKTSGIK PDVFTLNSLM
101: KGFCNAGNLE EAKRWYSEIA RNELPPVRAT YMTLIPFLVE KGDFEMATEL CKEVCSRRWL IEPALLQQVL EGLVKESKIE EATELVELEK LKKFRITLEL
201: PSDK

Best Arabidopsis Sequence Match ( AT3G13150.1 )
(BLAST)

001: MSKVGSSLYS RLHGIFKESS IATAKSAKPR SQTKSTKFPS KLKASTASVG DGGQSSNDAK DSKNSKLTQK VEKFKRSCES ESFRQVHGLY SAFIRRLREA
101: KKFSTIDEVL QYQKKFDDIK SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF KELPEKLGIT PDLVTYNTMI
201: KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
301: YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF
401: RYLPDLSAGK KKTTSSPVSS SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS YSSFSSSPDS SSSVSSSLFS
501: SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN SSSSSSGLLD D

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.