Factsheet for PGSC0003DMT400055889

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g079830.1.1	Tomato	mitochondrion	92.37	90.75
PGSC0003DMT400055888	Potato	mitochondrion	55.22	57.56
PGSC0003DMT400071165	Potato	extracellular	23.66	52.84
VIT_00s0271g00050.t01	Wine grape	mitochondrion	29.52	51.1
VIT_00s0271g00070.t01	Wine grape	mitochondrion	45.04	46.7
VIT_00s0271g00040.t01	Wine grape	cytosol	22.14	42.65
PGSC0003DMT400012953	Potato	cytosol	38.17	39.58
CDY43368	Canola	plastid	40.2	35.99
CDY24210	Canola	plastid	39.95	35.84
GSMUA_Achr10P...	Banana	mitochondrion	35.37	34.66
Bra039372.1-P	Field mustard	cytosol, plastid	38.93	32.01
HORVU3Hr1G077400.1	Barley	cytosol	30.28	31.07
TraesCS3B01G353300.1	Wheat	plastid	31.04	29.19
AT3G13150.1	Thale cress	plastid	40.46	28.86
Os01t0785700-01	Rice	mitochondrion	31.81	28.8
HORVU6Hr1G019320.1	Barley	plastid	32.82	27.8
TraesCS3A01G324300.1	Wheat	plastid	30.53	27.78
TraesCS3A01G324200.1	Wheat	plastid	32.06	27.69
TraesCS3A01G331700.1	Wheat	plastid	30.03	27.63
TraesCS3B01G361800.1	Wheat	plastid	30.79	27.56
Zm00001d012606_P001	Maize	mitochondrion	31.55	27.37
TraesCS3D01G317700.1	Wheat	plastid	32.82	27.33
TraesCS3D01G325200.1	Wheat	plastid	30.79	26.95
PGSC0003DMT400090439	Potato	plastid	27.23	26.35
EES01579	Sorghum	mitochondrion	28.75	26.34
TraesCS3A01G331600.1	Wheat	plastid	30.53	26.14
EES01580	Sorghum	mitochondrion	29.01	25.97
TraesCS3A01G324500.1	Wheat	plastid	31.04	25.79
PGSC0003DMT400072924	Potato	mitochondrion	26.46	25.68
HORVU3Hr1G077440.2	Barley	mitochondrion	31.55	25.25
PGSC0003DMT400029367	Potato	mitochondrion	24.43	23.88
EER95222	Sorghum	mitochondrion	29.77	23.73
TraesCS3D01G317800.1	Wheat	plastid	30.28	23.66
TraesCS3B01G353500.1	Wheat	plastid	30.03	23.46
PGSC0003DMT400039992	Potato	cytosol	24.43	23.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400055889	EnsemblPlantsGene:PGSC0003DMG400021712	EntrezGene:102598145	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1052	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG400021712	RefSeq:XP_006365868.1
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI000294CE28	UniProt:M1BYQ7	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021712]

Coordinates

chr2:+:35553804..35555247

Molecular Weight (calculated)

45500.5 Da

IEP (calculated)

8.409

GRAVY (calculated)

-0.463

Length

393 amino acids

Sequence
(BLAST)

001: MSSSSSVYRR LHGIFTGKHK VSVKLKTEQP QTTSTKPTSK LPEKHKLQTI VDNFKKSSES PEFRNRCTNY TTAIRRLEFN SSAIEDIFEH QKQYPEISNE
101: FFVCRLILLY GTAKMHEHAR KLFDEMPNLK CQRTVFSFNA LLEAYSRAEK YDIIRDLFRE LPGELSIEPD VVSYNTLIKA LWKAGSLDSS LSVMDEMENH
201: GIIPDKVTFN TLSNAYYESK KFSEAEDLWV LMQKKNVDAD LGSYTVRLQG LVANNQVSEA IELFEEMGKK DIIPKAFSYN IMIKMYVDDR NWEEARRWYV
301: KMVENGRYPD NATFEMLISF ACDKDNLDFA LELCKKAIAS KVAIYNATMQ RVVNVLAEHS KLEDAQELVN LAKSYKLFHS RPRSRYKLSL PSL

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.