Factsheet for PGSC0003DMT400012953

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400019556
PGSC0003DMT400046670
PGSC0003DMT400069639

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	PGSC0003DMT400001405	AT3G27960.1	21798944
AT1G55890.1	PGSC0003DMT400019556	AT4G24690.1	21798944
AT1G55890.1	PGSC0003DMT400046670	AT4G24690.1	21798944
AT1G55890.1	PGSC0003DMT400069639	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g031460.1.1	Tomato	plastid	96.57	96.57
VIT_00s0271g00080.t01	Wine grape	mitochondrion	53.3	55.65
VIT_00s0274g00040.t01	Wine grape	mitochondrion	55.94	55.5
KRH41973	Soybean	nucleus	51.72	51.44
Bra039373.1-P	Field mustard	cytosol	36.94	51.09
KRH49916	Soybean	cytosol	52.77	50.0
AT1G55890.1	Thale cress	mitochondrion	51.98	49.5
AT3G13160.1	Thale cress	mitochondrion	50.92	48.98
CDY66550	Canola	mitochondrion	37.99	48.16
CDY43367	Canola	mitochondrion	49.6	47.72
CDY24208	Canola	mitochondrion	49.08	47.21
CDY26081	Canola	mitochondrion	49.08	46.97
CDY08267	Canola	mitochondrion	49.08	46.85
Bra037096.1-P	Field mustard	mitochondrion	49.08	46.85
CDX82550	Canola	mitochondrion	48.55	46.82
Bra001492.1-P	Field mustard	mitochondrion	48.81	46.25
PGSC0003DMT400055888	Potato	mitochondrion	39.58	39.79
PGSC0003DMT400055889	Potato	plastid	39.58	38.17
GSMUA_Achr10P...	Banana	mitochondrion	37.99	35.91
PGSC0003DMT400071165	Potato	extracellular	15.83	34.09
HORVU3Hr1G077400.1	Barley	cytosol	34.3	33.94
TraesCS3A01G324300.1	Wheat	plastid	35.88	31.48
EES01580	Sorghum	mitochondrion	36.41	31.44
Zm00001d012606_P001	Maize	mitochondrion	37.47	31.35
EES01579	Sorghum	mitochondrion	35.36	31.24
Os01t0785700-01	Rice	mitochondrion	35.62	31.11
TraesCS3A01G324200.1	Wheat	plastid	36.68	30.55
TraesCS3B01G353300.1	Wheat	plastid	32.98	29.9
PGSC0003DMT400090439	Potato	plastid	31.66	29.56
TraesCS3A01G331700.1	Wheat	plastid	32.98	29.27
TraesCS3D01G317700.1	Wheat	plastid	36.15	29.03
TraesCS3B01G361800.1	Wheat	plastid	33.51	28.93
TraesCS3D01G325200.1	Wheat	plastid	34.04	28.73
TraesCS3A01G331600.1	Wheat	plastid	34.04	28.1
TraesCS3A01G324500.1	Wheat	plastid	34.56	27.7
EER95222	Sorghum	mitochondrion	35.62	27.38
HORVU6Hr1G019320.1	Barley	plastid	33.51	27.37
PGSC0003DMT400072924	Potato	mitochondrion	29.02	27.16
PGSC0003DMT400039992	Potato	cytosol	29.29	27.01
HORVU3Hr1G077440.2	Barley	mitochondrion	34.56	26.68
PGSC0003DMT400029367	Potato	mitochondrion	27.97	26.37
TraesCS3B01G353500.1	Wheat	plastid	33.77	25.45
TraesCS3D01G317800.1	Wheat	plastid	33.77	25.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400012953	EnsemblPlantsGene:PGSC0003DMG400005048	EntrezGene:102584900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1052	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG400005048	RefSeq:XP_006343276.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000295D263	UniProt:M1A228	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005048]

Coordinates

chr3:+:2352221..2353598

Molecular Weight (calculated)

43106.9 Da

IEP (calculated)

9.166

GRAVY (calculated)

-0.380

Length

379 amino acids

Sequence
(BLAST)

001: MASLSRVIRR TFSTAEASVS PIRTISDDLY KERNLKRLVE KFKQYSDVTR FRTKTGIYES TVHRLASAKR YKWIEEILEH QKQYRPDISK ESFAARLVSL
101: YGKSGLFENA QKVFDEMPER NCKQSVKSVN ALLGACVNSQ KYDKLEGLFE ELLEKLKVKP DVVTYNIMIK GLCDKGELDK AAAFVDEIEK NGLKPDLVTF
201: NTILGVFYSN GKFDDGEKMW KLMVSKNVVP DIRSYNAKLV GLMNENKVSE AAKLVGELGS FELKPDVFTY GALIRGFCKM SNLEEAKKWY EELVKSSSAP
301: NKVIFASVIS SACEKGDFDW ALELCKEVFK RKCNVDAKLL QRVVDGLVSS SRIREAKEVV HLGKSNDYHL YKLNLPSDD

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.