Factsheet for TraesCS2A01G327000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G328600.1
TraesCS7B01G229300.1
TraesCS7D01G325500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	TraesCS7A01G328600.1	AT4G29820.1	21798944
AT4G24690.1	TraesCS7B01G229300.1	AT4G29820.1	21798944
AT4G24690.1	TraesCS7D01G325500.1	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	89.49	89.7
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	85.51	85.61
HORVU2Hr1G082590.15	Barley	nucleus	76.75	72.44
Os04t0476800-01	Rice	nucleus	42.29	41.09
GSMUA_AchrUn_...	Banana	extracellular	6.66	38.51
KXG26554	Sorghum	nucleus	39.02	37.32
TraesCS6A01G208300.2	Wheat	nucleus	37.85	37.24
PGSC0003DMT400019556	Potato	extracellular	4.09	35.71
CDY08946	Canola	plastid	26.99	35.59
Zm00001d003300_P001	Maize	nucleus	30.84	35.34
CDY11029	Canola	plastid	26.87	33.97
Bra010484.1-P	Field mustard	plastid	26.52	33.28
Bra019212.1-P	Field mustard	plastid	26.64	33.04
CDY34302	Canola	plastid	26.99	32.91
CDX92649	Canola	cytosol	26.52	32.85
CDY03427	Canola	cytosol	26.87	32.62
Bra013825.1-P	Field mustard	plastid	26.52	32.34
CDY24845	Canola	plastid	25.47	32.3
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	26.05	31.68
PGSC0003DMT400069639	Potato	nucleus	26.29	30.61
Solyc06g071770.2.1	Tomato	nucleus	26.17	30.39
KRH03220	Soybean	nucleus	26.87	28.33
PGSC0003DMT400046670	Potato	nucleus	27.92	27.73
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	27.69	27.43
KRH57136	Soybean	nucleus	28.04	27.33
VIT_17s0000g09280.t01	Wine grape	nucleus	26.17	25.75

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008270	InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783
InterPro:IPR015940	InterPro:Ig-like_fold	InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569
PFAM:PF16158	PFscan:PS50030	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF3
SMART:SM00291	SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS2A01G327000
EnsemblPlants:TraesCS2A01G327000.1	InterPro:UBA	InterPro:UBA-like_sf	InterPro:Znf_ZZ	TIGR:cd14319	TIGR:cd14947
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:558525051..558529660

Molecular Weight (calculated)

92334.9 Da

IEP (calculated)

5.281

GRAVY (calculated)

-0.371

Length

856 amino acids

Sequence
(BLAST)

001: MMPQRDTPPP FRGLVPLGRP RDLVIKVNYG GTLKRFSAFV NGSNLDHNLA ALRSKIANAF KFSPEEQFIL TYTDEDGDIV MLDDDDDLRD AAVSQELNPL
101: RIDVQLKSST AGAPQPNQQA LNSRSKMSAA MEDQLAQVKS AIDEALKFVP EQVPAVLAKL SHELRSKAAS SAPPVRELLD RIAKLMTPKS GMEPTSGLSY
201: SSSGSSSGNP QTFRDMKDSN ASESATASAS NSQHAKSSRA LGLKSVLVEK TNAQVQQAPG CTSIGVPSVL VGSGGELLYH KKRTDALSKG KSHAQSMGKS
301: VMSSSVPPVP SFAPGGSTLG SANGYMPFGS IRKINGDSSS AFPPPRGPPS SSIPTFETDP ILNPYTSVAT HGLQKAFPPP PAYNYNQFRF SRPSLVNSYG
401: NYQDPYSFGS YSGYGTPQQS VHKWVECDGG CGVTPIVGPR YKSNVKYNYD LCSACFYRMG NEAEYARMDK PLSVSERLRN LNKDKRFLQL DCRFVKDLTV
501: PDGTRMAPST PFRKIWCMLN NGNIIWPYGT HLAWVGGDQF ARQSLVKLAI PEAGFPLNGE IDVCVDFVSP AKPGRYISYW RLTSPDLQKF GQQVWVLIEV
601: EEPVQASGDN QTAAIDLNLP AVSNPATSRP SIVQQPVQTS GNKGTAAVNF LSLPAEGSTA TWTSDSASDS DDDGIPLREV LATLRRKGPK AVGSVVPSAP
701: AADEPVQVPI AYPQAADEPV QVPIAYTQAA DEPVQVPVIY PHASSAEALG MPTGVAAPEA APLPEPMSVP EPLPAPTLVS SHVAPVSMPS PDETINNNME
801: EKLLRELADM GFRQVDLNTE VLRQNEYDLQ KSVDDLCGFH EWDPLLAELK ELGFDD

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.