Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0793200-01 | Rice | mitochondrion | 7.05 | 19.49 |
| Os02t0829800-01 | Rice | mitochondrion | 6.4 | 16.31 |
| Os02t0633200-01 | Rice | mitochondrion | 6.49 | 15.38 |
| Os01t0785700-01 | Rice | mitochondrion | 5.94 | 14.75 |
| Os08t0499800-01 | Rice | mitochondrion | 5.94 | 14.45 |
| Os10t0484900-00 | Rice | mitochondrion | 5.57 | 14.02 |
Protein Annotations
| Gene3D:1.10.10.440 | MapMan:16.4.1.1.5.5 | Gene3D:2.20.70.10 | EntrezGene:4348939 | ProteinID:ABB47801.1 | ProteinID:BAF26807.1 |
| ProteinID:BAT11373.1 | ncoils:Coil | InterPro:FF_domain | InterPro:FF_domain_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001202 | InterPro:IPR002713 | InterPro:IPR036517 | EnsemblPlantsGene:Os10g0485000 | EnsemblPlants:Os10t0485000-01 |
| PFAM:PF00397 | PFAM:PF01846 | ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51676 | PANTHER:PTHR15377 |
| PANTHER:PTHR15377:SF3 | UniProt:Q337J6 | SMART:SM00441 | SMART:SM00456 | SUPFAM:SSF51045 | SUPFAM:SSF81698 |
| UniParc:UPI00005E1F22 | InterPro:WW_dom | InterPro:WW_dom_sf | RefSeq:XP_015614639.1 | SEG:seg | : |
Description
Mediator 35_1FF domain containing protein. (Os10t0485000-01)
Coordinates
chr10:-:18321124..18331773
Molecular Weight (calculated)
116643.0 Da
IEP (calculated)
8.645
GRAVY (calculated)
-0.802
Length
1078 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATPATAASD ATNPEAAEVP SAAPASESEG PFDSGVVAAA TTPAVVDSAV EGDAPAAPAP TSGSGPAAPS MPANPASPAT PGPPRPQFAG SPAYASPPAP
0101: AFSYNVLPRP SPRPQVGSGA AQQQLASPPA MMAPSVAAAA LQPPVPGQYF GNRPSFSYNV VSHANAGLPT GQQFQLDTGT NHAVQVSRFV PPSSLQPPAP
0201: MNLARPSSAF PGAGAMPPNP PGSIRLPFPG PPRPSINTFV ASPQQAQPQA SQLPSNSGSS DVSTSRSDTR SVPEASPQTM QLSTGPPSTS TAGSPSITVQ
0301: MPTNPSLPTR PEVFGAIGAS VPGQPSTILS APPSLLGRPM TPSASPFPQT SQSPTAFQQP GQQQLYPSYP SAHGVQPQPL WGYPPQPTGF QQPPFQSYPS
0401: GLLGPLGRPM VGSSSVTAYL PSIQPPGVST TDRDSKELSS ANPGSEQPTQ QGSQNSDQLE DKRTTAIQDS DSWSAHKTEA GVVYYYNALT GESTYQKPPG
0501: YKGEPEKVAA QPVPVSWDKL AGTDWSIVTT SDGKKYYYDN KLKVSSWQLP PEVAELIKNA ESGPLKGSST SLQDAGTIGN KEEISIDIDT PAVQTGGRDS
0601: LPLRQTVAPA SSSALDLIKK KLQDAGASSV PSPLATPSSA SELNGSKTTD AAPMGHQVSI SGEKSKDNSG DGNMSDSSSN SDDEEHGPSE EECTRQFKEM
0701: LKERGVLPFS KWEKELPKIV FDPRFKAIPS HSRRRSTFEQ YVRTRADEER KEKRAAQRAA VEAYKQLLEE ASEDINSNKD YKEFKRKWGT DPRFEALDRK
0801: ERDALFNEKV KSIEEKVQSV RNAVIAEFKS MLRESKDITS TSRWTKVKEN FRSDARYKAM KHEEREVAFN EYIAELKSAE KEAEQAAKAK LDEQAKLKER
0901: EREMRKRKER EEQEMERVKL KIRRKEAVSS YQALLVEIIK DPKASWTESK PRLEKDPQGR AVNPDLGKGD AEKLFRDHVK DLYERCVRDF RALLSEVITP
1001: EIAARTTDEG KTAINSWTEA KGLLRSDPRY NKLASKDRES IWRRYADDMK TKLKQSDMKE RSDTDGKQRR SSDPPRRR
0101: AFSYNVLPRP SPRPQVGSGA AQQQLASPPA MMAPSVAAAA LQPPVPGQYF GNRPSFSYNV VSHANAGLPT GQQFQLDTGT NHAVQVSRFV PPSSLQPPAP
0201: MNLARPSSAF PGAGAMPPNP PGSIRLPFPG PPRPSINTFV ASPQQAQPQA SQLPSNSGSS DVSTSRSDTR SVPEASPQTM QLSTGPPSTS TAGSPSITVQ
0301: MPTNPSLPTR PEVFGAIGAS VPGQPSTILS APPSLLGRPM TPSASPFPQT SQSPTAFQQP GQQQLYPSYP SAHGVQPQPL WGYPPQPTGF QQPPFQSYPS
0401: GLLGPLGRPM VGSSSVTAYL PSIQPPGVST TDRDSKELSS ANPGSEQPTQ QGSQNSDQLE DKRTTAIQDS DSWSAHKTEA GVVYYYNALT GESTYQKPPG
0501: YKGEPEKVAA QPVPVSWDKL AGTDWSIVTT SDGKKYYYDN KLKVSSWQLP PEVAELIKNA ESGPLKGSST SLQDAGTIGN KEEISIDIDT PAVQTGGRDS
0601: LPLRQTVAPA SSSALDLIKK KLQDAGASSV PSPLATPSSA SELNGSKTTD AAPMGHQVSI SGEKSKDNSG DGNMSDSSSN SDDEEHGPSE EECTRQFKEM
0701: LKERGVLPFS KWEKELPKIV FDPRFKAIPS HSRRRSTFEQ YVRTRADEER KEKRAAQRAA VEAYKQLLEE ASEDINSNKD YKEFKRKWGT DPRFEALDRK
0801: ERDALFNEKV KSIEEKVQSV RNAVIAEFKS MLRESKDITS TSRWTKVKEN FRSDARYKAM KHEEREVAFN EYIAELKSAE KEAEQAAKAK LDEQAKLKER
0901: EREMRKRKER EEQEMERVKL KIRRKEAVSS YQALLVEIIK DPKASWTESK PRLEKDPQGR AVNPDLGKGD AEKLFRDHVK DLYERCVRDF RALLSEVITP
1001: EIAARTTDEG KTAINSWTEA KGLLRSDPRY NKLASKDRES IWRRYADDMK TKLKQSDMKE RSDTDGKQRR SSDPPRRR
001: MEGENTTDPP YTTAASSGQS IFVRPPPIAP VLATTSNFSQ SELKELHSMS IASTGFVSQS VPYSVTAQWG TNAAASSNVN PIPQASPMLA NAPFGRPGTL
101: APPGLMTSPP AFPGSNPFST TPRPGMSAGP AQMNPGIHPH MYPPYHSLPG TPQGMWLQPP SMGGIPRAPF LSHPTTFPGS YPFPVRGISP NLPYSGSHPL
201: GASPMGSVGN VHALPGRQPD ISPGRKTEEL SGIDDRAGSQ LVGNRLDAWT AHKSEAGVLY YYNSVTGQST YEKPPGFGGE PDKVPVQPIP VSMESLPGTD
301: WALVSTNDGK KYYYNNKTKV SSWQIPAEVK DFGKKLEERA MESVASVPSA DLTEKGSDLT SLSAPAISNG GRDAASLKTT NFGSSALDLV KKKLHDSGMP
401: VSSTITSEAN SGKTTEVTPS GESGNSTGKV KDAPGAGALS DSSSDSEDED SGPSKEECSK QFKEMLKERG IAPFSKWEKE LPKIIFDPRF KAIPSHSVRR
501: SLFEQYVKTR AEEERREKRA AHKAAIEGFR QLLDDASTDI DQHTDYRAFK KKWGNDLRFE AIERKEREGL LNERVLSLKR SAEQKAQEIR AAAASDFKTM
601: LREREISINS HWSKVKDSLR NEPRYRSVAH EDREVFYYEY IAELKAAQRG DDHEMKARDE EDKLRERERE LRKRKEREVQ EVERVRQKIR RKEASSSYQA
701: LLVEKIRDPE ASWTESKPIL ERDPQKRASN PDLEPADKEK LFRDHVKSLY ERCVHDFKAL LAEALSSEAA TLQTEDGKTA LNSWSTAKQV LKPDIRYSKM
801: PRQDREVVWR RYVEDISRKQ RHENYQEEKQ RDYKT
101: APPGLMTSPP AFPGSNPFST TPRPGMSAGP AQMNPGIHPH MYPPYHSLPG TPQGMWLQPP SMGGIPRAPF LSHPTTFPGS YPFPVRGISP NLPYSGSHPL
201: GASPMGSVGN VHALPGRQPD ISPGRKTEEL SGIDDRAGSQ LVGNRLDAWT AHKSEAGVLY YYNSVTGQST YEKPPGFGGE PDKVPVQPIP VSMESLPGTD
301: WALVSTNDGK KYYYNNKTKV SSWQIPAEVK DFGKKLEERA MESVASVPSA DLTEKGSDLT SLSAPAISNG GRDAASLKTT NFGSSALDLV KKKLHDSGMP
401: VSSTITSEAN SGKTTEVTPS GESGNSTGKV KDAPGAGALS DSSSDSEDED SGPSKEECSK QFKEMLKERG IAPFSKWEKE LPKIIFDPRF KAIPSHSVRR
501: SLFEQYVKTR AEEERREKRA AHKAAIEGFR QLLDDASTDI DQHTDYRAFK KKWGNDLRFE AIERKEREGL LNERVLSLKR SAEQKAQEIR AAAASDFKTM
601: LREREISINS HWSKVKDSLR NEPRYRSVAH EDREVFYYEY IAELKAAQRG DDHEMKARDE EDKLRERERE LRKRKEREVQ EVERVRQKIR RKEASSSYQA
701: LLVEKIRDPE ASWTESKPIL ERDPQKRASN PDLEPADKEK LFRDHVKSLY ERCVHDFKAL LAEALSSEAA TLQTEDGKTA LNSWSTAKQV LKPDIRYSKM
801: PRQDREVVWR RYVEDISRKQ RHENYQEEKQ RDYKT
Arabidopsis Description
MED35CPre-mRNA-processing protein 40C [Source:UniProtKB/Swiss-Prot;Acc:Q9LT25]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.