Factsheet for Os08t0499800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006609_P001	Maize	cytosol	59.59	84.62
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	81.49	81.12
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	81.26	80.9
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	81.72	80.8
Zm00001d014711_P001	Maize	cytosol	51.69	80.63
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	80.14	79.06
Zm00001d031321_P001	Maize	mitochondrion	81.72	78.87
EES15434	Sorghum	plastid	81.49	77.63
HORVU3Hr1G070290.2	Barley	mitochondrion	61.63	68.94
CDY54310	Canola	mitochondrion	45.6	51.66
AT1G80150.1	Thale cress	mitochondrion	45.6	50.88
CDY57688	Canola	mitochondrion	44.47	50.38
CDY38649	Canola	mitochondrion	44.02	50.26
Bra008492.1-P	Field mustard	mitochondrion	44.47	50.26
Bra003553.1-P	Field mustard	mitochondrion	44.24	50.13
CDY37572	Canola	mitochondrion	44.7	49.75
VIT_09s0002g06540.t01	Wine grape	mitochondrion	46.73	49.05
PGSC0003DMT400072924	Potato	mitochondrion	42.44	46.42
Solyc05g012250.1.1	Tomato	mitochondrion	42.21	36.31
Os01t0785700-01	Rice	mitochondrion	24.38	24.88
Os01t0793200-01	Rice	mitochondrion	21.9	24.87
Os02t0829800-01	Rice	mitochondrion	23.48	24.59
Os02t0633200-01	Rice	mitochondrion	24.61	23.96
Os10t0484900-00	Rice	mitochondrion	22.12	22.9
Os10t0485000-01	Rice	cytosol	14.45	5.94

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4345942	EMBL:AK102014	ProteinID:BAD08807.1	ProteinID:BAF24064.1
ProteinID:BAT06101.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os08g0499800	EnsemblPlants:Os08t0499800-01
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1623	InterPro:Pentatricopeptide_repeat
UniProt:Q6ZKM5	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000023AC0E	RefSeq:XP_015648389.1	RefSeq:XP_015648390.1

Description

Pentatricopeptide repeat domain containing protein. (Os08t0499800-01)

Coordinates

chr8:+:24673130..24676283

Molecular Weight (calculated)

50502.5 Da

IEP (calculated)

9.921

GRAVY (calculated)

-0.278

Length

443 amino acids

Sequence
(BLAST)

001: MLSLGAIRKL CAAFDAIALT VIAAGLSRTS HHPFSAHAHY SQPDFPTIAS CRAAVASSKW RRRHPSTTKE SAGVEPAEPP VLVRIKNERD PVRLYELFRA
101: NAHNRLLIEN RFAFEDAVAR LAGARRNDLV EEILEQHKAL PQGRREGFVV RIIGLYGKAR MPDHALSTFR EMGLYGCPRT AKSLNATMKV LLRARLFDEV
201: LQLFESSETY GVELDDISYN TVVKMMCDLG ELRAAFRVMQ EMEKAGVRPD VITYTTLMDA FYKCGQREVG DGLWNLMRLR GCMPTLASYN VRIQFLVNRR
301: RGWQANDLVR KMYASGLRPD EITYNLVIKG FFMMGEHEMA KTVFGAMHGR GCKPNAKVYQ TMVHYLCERR EFDLAFRLCK DSMEKNWFPS VDTINQLLKG
401: LISISKDRNA REIMKLVIGR KPSYSNDEVK TFQDILSLGN TRR

Best Arabidopsis Sequence Match ( AT1G80150.1 )
(BLAST)

001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g80150, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GW57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.