Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G254000.1 | Wheat | nucleus | 92.89 | 93.88 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 92.89 | 92.89 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 77.11 | 70.6 |
| EER95303 | Sorghum | nucleus, plastid | 58.42 | 58.27 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 47.63 | 52.77 |
| KRH52056 | Soybean | nucleus | 28.42 | 51.18 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 37.11 | 49.3 |
| CDY06752 | Canola | nucleus | 36.32 | 48.42 |
| TraesCS5A01G072000.1 | Wheat | plastid | 44.74 | 45.21 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 42.89 | 44.66 |
| PGSC0003DMT400030222 | Potato | nucleus | 40.79 | 43.79 |
| Solyc12g088500.1.1 | Tomato | nucleus | 40.53 | 43.5 |
| Solyc12g088520.1.1 | Tomato | nucleus | 40.26 | 43.1 |
| AT5G43080.1 | Thale cress | nucleus | 40.26 | 43.1 |
| KRH61375 | Soybean | nucleus | 36.84 | 42.81 |
| Solyc12g088470.1.1 | Tomato | nucleus | 40.26 | 42.5 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 40.26 | 42.5 |
| CDY17091 | Canola | nucleus | 40.0 | 42.46 |
| CDY22369 | Canola | nucleus | 39.21 | 42.45 |
| PGSC0003DMT400030176 | Potato | nucleus | 39.74 | 42.42 |
| Bra033658.1-P | Field mustard | nucleus | 39.21 | 41.85 |
| Solyc12g088530.1.1 | Tomato | nucleus | 38.95 | 41.81 |
| Solyc04g078310.2.1 | Tomato | nucleus | 40.79 | 41.78 |
| CDY66770 | Canola | nucleus | 39.74 | 41.71 |
| PGSC0003DMT400055428 | Potato | nucleus | 40.26 | 41.58 |
| Zm00001d048127_P001 | Maize | plastid | 52.37 | 41.54 |
| CDY47596 | Canola | nucleus | 39.47 | 41.32 |
| Bra040793.1-P | Field mustard | nucleus | 39.47 | 41.32 |
| KRH61371 | Soybean | nucleus | 37.89 | 41.26 |
| KRH15427 | Soybean | nucleus, plastid | 39.47 | 41.21 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 39.21 | 41.05 |
| CDY17039 | Canola | nucleus | 39.21 | 41.05 |
| CDY06757 | Canola | nucleus, plastid | 39.21 | 41.05 |
| KRH61369 | Soybean | nucleus | 35.26 | 40.98 |
| AT1G47220.1 | Thale cress | nucleus | 35.26 | 40.98 |
| CDY47595 | Canola | nucleus, plastid | 40.0 | 40.97 |
| Bra040710.1-P | Field mustard | nucleus | 40.0 | 40.97 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 38.95 | 40.66 |
| CDY17037 | Canola | nucleus, plastid | 38.95 | 40.66 |
| Os03t0208700-00 | Rice | nucleus | 43.42 | 40.34 |
| Bra032220.1-P | Field mustard | nucleus | 37.89 | 40.34 |
| KRH05614 | Soybean | nucleus | 38.95 | 40.33 |
| AT1G47210.2 | Thale cress | nucleus | 39.47 | 40.32 |
| TraesCS4A01G236700.2 | Wheat | plastid | 39.74 | 40.27 |
| KRH52055 | Soybean | nucleus | 37.89 | 40.22 |
| CDY23653 | Canola | nucleus | 37.63 | 40.06 |
| KRH61373 | Soybean | nucleus, plastid | 38.42 | 38.93 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 37.63 | 38.65 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 34.21 | 38.12 |
| PGSC0003DMT400056625 | Potato | nucleus | 37.11 | 37.11 |
| Solyc10g049360.1.1 | Tomato | nucleus | 36.84 | 37.04 |
| TraesCS3A01G523600.1 | Wheat | plastid | 35.79 | 26.82 |
| TraesCS5A01G108500.2 | Wheat | plastid | 35.0 | 26.18 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 27.89 | 25.3 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 27.37 | 25.12 |
| TraesCS3A01G157000.1 | Wheat | plastid | 33.42 | 24.76 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 33.16 | 24.0 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 25.53 | 23.95 |
| Os03t0208800-00 | Rice | nucleus | 24.21 | 23.17 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 26.58 | 23.17 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 27.37 | 22.61 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 18.68 | 21.58 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G050700.1 | EnsemblPlantsGene:TraesCS4A01G050700 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF231 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SEG:seg | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : | : |
Description
No Description!
Coordinates
chr4A:+:41915819..41918050
Molecular Weight (calculated)
41857.5 Da
IEP (calculated)
8.456
GRAVY (calculated)
-0.141
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPRGRRRKQ QGAAEEKENT ASAAPPAPKR PRCTERRALA ELPAASTANN ASAAPTGAPS KPMTRAAARE AAAAAVEEEA RRREGSAIAA RPAASRQTDA
101: GAAQASVGPY VADIDGYLRS LEVEQLRRPR DDYMVAMQKD ISATMRGILV DWLVDVVDEF NLLADTLYLA VSYIDPFLAA SVVTRDKLQL LGVASLFVAA
201: KYEEIHVPKL DKFSDITDGT YTNQQVVKME ADILKYLNFQ MGSPTVRTFL LRFLISCCGG NCASAKRLEL MCCYLAELSL LDYDCIRFLP SVIAAACLFL
301: ARFTISPKIC PWNFTLQEKT GYKVSDLRSC ILRIHDLQLG RQYSNLKAIK SKYSERKFGC VSMMASSEEI PASLLKDLDK
101: GAAQASVGPY VADIDGYLRS LEVEQLRRPR DDYMVAMQKD ISATMRGILV DWLVDVVDEF NLLADTLYLA VSYIDPFLAA SVVTRDKLQL LGVASLFVAA
201: KYEEIHVPKL DKFSDITDGT YTNQQVVKME ADILKYLNFQ MGSPTVRTFL LRFLISCCGG NCASAKRLEL MCCYLAELSL LDYDCIRFLP SVIAAACLFL
301: ARFTISPKIC PWNFTLQEKT GYKVSDLRSC ILRIHDLQLG RQYSNLKAIK SKYSERKFGC VSMMASSEEI PASLLKDLDK
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.