Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G064490.1 | Barley | nucleus | 27.85 | 84.72 |
| TraesCS5A01G506500.1 | Wheat | nucleus | 73.97 | 77.51 |
| HORVU5Hr1G031690.1 | Barley | extracellular | 33.79 | 67.27 |
| HORVU3Hr1G064580.1 | Barley | nucleus | 36.53 | 61.07 |
| Os03t0137800-01 | Rice | mitochondrion, nucleus, plastid | 55.71 | 55.2 |
| Zm00001d048363_P001 | Maize | nucleus | 49.32 | 50.23 |
| TraesCS1D01G148400.2 | Wheat | cytosol, nucleus, plastid | 44.29 | 47.78 |
| Zm00001d027585_P001 | Maize | nucleus | 46.12 | 47.42 |
| EER95545 | Sorghum | nucleus | 44.75 | 46.01 |
| GSMUA_Achr11P... | Banana | nucleus | 39.73 | 43.5 |
| GSMUA_Achr5P20430_001 | Banana | nucleus | 37.44 | 43.16 |
| GSMUA_Achr2P11790_001 | Banana | nucleus | 39.27 | 42.36 |
| GSMUA_Achr8P12510_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 36.53 | 41.67 |
| GSMUA_Achr1P00900_001 | Banana | nucleus | 35.16 | 40.74 |
| GSMUA_Achr11P... | Banana | nucleus | 33.79 | 39.36 |
| HORVU4Hr1G080410.1 | Barley | nucleus | 64.84 | 38.07 |
| GSMUA_Achr5P12920_001 | Banana | nucleus | 36.99 | 36.65 |
| KRG92238 | Soybean | nucleus | 36.99 | 36.16 |
| GSMUA_Achr4P26490_001 | Banana | nucleus | 35.62 | 35.78 |
| PGSC0003DMT400076291 | Potato | nucleus | 32.42 | 33.97 |
| Solyc09g091780.2.1 | Tomato | nucleus | 32.42 | 33.81 |
| VIT_05s0029g00040.t01 | Wine grape | nucleus | 38.81 | 32.82 |
| Solyc12g098310.1.1 | Tomato | nucleus | 33.79 | 31.9 |
| PGSC0003DMT400019919 | Potato | nucleus | 33.33 | 31.2 |
| CDY59640 | Canola | nucleus | 15.98 | 27.78 |
| CDY19160 | Canola | nucleus | 30.59 | 27.57 |
| Bra021808.1-P | Field mustard | nucleus | 30.14 | 27.5 |
| CDX79470 | Canola | nucleus | 30.59 | 27.02 |
| Bra022897.1-P | Field mustard | nucleus | 30.59 | 26.8 |
| CDX84726 | Canola | nucleus | 30.14 | 26.72 |
| CDY23793 | Canola | nucleus | 29.68 | 26.64 |
| Bra005565.1-P | Field mustard | nucleus | 27.4 | 26.55 |
| CDY12181 | Canola | nucleus | 28.77 | 26.36 |
| AT2G32710.1 | Thale cress | nucleus | 34.7 | 26.3 |
Protein Annotations
| MapMan:13.1.1.3.1 | InterPro:CDI | ncoils:Coil | GO:GO:0003674 | GO:GO:0004861 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 | GO:GO:0007050 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0030234 | PFAM:PF02234 | PIRSF:PIRSF017811 | PANTHER:PTHR10265 | PANTHER:PTHR10265:SF23 |
| EnsemblPlantsGene:TraesCS4D01G332500 | EnsemblPlants:TraesCS4D01G332500.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4D:+:490091688..490094147
Molecular Weight (calculated)
21323.7 Da
IEP (calculated)
5.882
GRAVY (calculated)
-0.801
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKYMRKSKA SGEVAVMEVA XXXXXXXXXX XXXXXXXXXX XXXXXXPSPS PSQQPQRKGQ EDGDYLELRS RRLEKQPPPG PKEKGDAPQP AARRAAAAGG
101: RGMESFAAEG FEADLEVSFG DNVLDWDATD RGARETTPCS LIYSSETMST PGSATGARNH SRRRAQTPVC RYVPSSLEMD EFFAAAEQQQ HQTFREKYNF
201: CPASERPLPG RYEWTVLDC
101: RGMESFAAEG FEADLEVSFG DNVLDWDATD RGARETTPCS LIYSSETMST PGSATGARNH SRRRAQTPVC RYVPSSLEMD EFFAAAEQQQ HQTFREKYNF
201: CPASERPLPG RYEWTVLDC
001: MGKYIRKSKI DGAGAGAGGG GGGGGGGESS IALMDVVSPS SSSSLGVLTR AKSLALQQQQ QRCLLQKPSS PSSLPPTSAS PNPPSKQKMK KKQQQMNDCG
101: SYLQLRSRRL QKKPPIVVIR STKRRKQQRR NETCGRNPNP RSNLDSIRGD GSRSDSVSES VVFGKDKDLI SEINKDPTFG QNFFDLEEEH TQRTTRESTP
201: CSLIRRPEIM TTPGSSTKLN ICVSESNQRE DSLSRSHRRR PTTPEMDEFF SGAEEEQQKQ FIEKYNFDPV NEQPLPGRFE WTKVDD
101: SYLQLRSRRL QKKPPIVVIR STKRRKQQRR NETCGRNPNP RSNLDSIRGD GSRSDSVSES VVFGKDKDLI SEINKDPTFG QNFFDLEEEH TQRTTRESTP
201: CSLIRRPEIM TTPGSSTKLN ICVSESNQRE DSLSRSHRRR PTTPEMDEFF SGAEEEQQKQ FIEKYNFDPV NEQPLPGRFE WTKVDD
Arabidopsis Description
KRP4Cyclin-dependent kinase inhibitor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.