Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G064490.1 | Barley | nucleus | 29.19 | 84.72 |
| TraesCS4D01G332500.1 | Wheat | nucleus | 77.51 | 73.97 |
| HORVU5Hr1G031690.1 | Barley | extracellular | 35.41 | 67.27 |
| HORVU3Hr1G064580.1 | Barley | nucleus | 39.71 | 63.36 |
| Os03t0137800-01 | Rice | mitochondrion, nucleus, plastid | 63.16 | 59.73 |
| Zm00001d048363_P001 | Maize | nucleus | 58.37 | 56.74 |
| Zm00001d027585_P001 | Maize | nucleus | 55.02 | 53.99 |
| TraesCS1A01G151400.1 | Wheat | nucleus | 52.15 | 53.69 |
| EER95545 | Sorghum | nucleus | 54.55 | 53.52 |
| GSMUA_Achr8P12510_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 44.5 | 48.44 |
| GSMUA_Achr11P... | Banana | nucleus | 45.45 | 47.5 |
| GSMUA_Achr5P20430_001 | Banana | nucleus | 43.06 | 47.37 |
| GSMUA_Achr1P00900_001 | Banana | nucleus | 41.63 | 46.03 |
| GSMUA_Achr2P11790_001 | Banana | nucleus | 44.02 | 45.32 |
| HORVU4Hr1G080410.1 | Barley | nucleus | 78.47 | 43.97 |
| GSMUA_Achr11P... | Banana | nucleus | 39.23 | 43.62 |
| GSMUA_Achr5P12920_001 | Banana | nucleus | 44.02 | 41.63 |
| GSMUA_Achr4P26490_001 | Banana | nucleus | 40.67 | 38.99 |
| KRG92238 | Soybean | nucleus | 40.67 | 37.95 |
| PGSC0003DMT400076291 | Potato | nucleus | 36.84 | 36.84 |
| Solyc09g091780.2.1 | Tomato | nucleus | 36.36 | 36.19 |
| Solyc12g098310.1.1 | Tomato | nucleus | 38.76 | 34.91 |
| VIT_05s0029g00040.t01 | Wine grape | nucleus | 43.06 | 34.75 |
| PGSC0003DMT400019919 | Potato | nucleus | 38.28 | 34.19 |
| CDY23793 | Canola | nucleus | 35.89 | 30.74 |
| Bra022897.1-P | Field mustard | nucleus | 36.36 | 30.4 |
| CDX79470 | Canola | nucleus | 35.89 | 30.24 |
| CDY59640 | Canola | nucleus | 18.18 | 30.16 |
| CDY19160 | Canola | nucleus | 34.93 | 30.04 |
| Bra021808.1-P | Field mustard | nucleus | 34.45 | 30.0 |
| Bra005565.1-P | Field mustard | nucleus | 32.06 | 29.65 |
| CDX84726 | Canola | nucleus | 34.93 | 29.55 |
| AT2G32710.1 | Thale cress | nucleus | 40.19 | 29.07 |
| CDY12181 | Canola | nucleus | 32.54 | 28.45 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G506500.1 | EnsemblPlantsGene:TraesCS5A01G506500 | GO:GO:0003674 | GO:GO:0004861 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 | GO:GO:0007050 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0030234 | InterPro:CDI | PANTHER:PTHR10265 | PANTHER:PTHR10265:SF23 | PFAM:PF02234 | PIRSF:PIRSF017811 |
| SEG:seg | MapMan:13.1.1.3.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:671390885..671393323
Molecular Weight (calculated)
22986.8 Da
IEP (calculated)
7.342
GRAVY (calculated)
-0.841
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKYMRKSKA SGEVAVMEVA GALLGVRTRS RTLAAQQQRA PSPSPQRKGH EDGDYLELRS RRLEKQPPPG PKDKEDAPQP PAAGGRRMEQ APSSFAAEGF
101: EADLEVSFGD NVLDWDATDR GARETTPCSL IYSSETMSTP GSATGGARNH SRRRAQTPVC RYVPSSLEMD EFFAAAEQQQ HQTFRDKYNF CPASGCPLPG
201: RYEWTVLDC
101: EADLEVSFGD NVLDWDATDR GARETTPCSL IYSSETMSTP GSATGGARNH SRRRAQTPVC RYVPSSLEMD EFFAAAEQQQ HQTFRDKYNF CPASGCPLPG
201: RYEWTVLDC
001: MGKYMKKSKI TGDISVMEVS KATAPSPGVR TRAAKTLALK RLNSSAADSA LPNDSSCYLQ LRSRRLEKPS SLIEPKQPPR VHRSGIKESG SRSRVDSVNS
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP
Arabidopsis Description
KRP3Inhibitor/interactor with cyclin-dependent kinase [Source:UniProtKB/TrEMBL;Acc:F4K388]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.