Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX67944 | nucleus |
| CDX68497 | |
| CDX69832 | nucleus |
| CDX72453 | nucleus |
| CDX72643 | nucleus |
| CDX73462 | |
| CDX75405 | nucleus |
| CDX76265 | nucleus |
| CDX78253 | |
| CDX79389 | nucleus |
| CDX83047 | |
| CDX83262 | |
| CDX87018 | |
| CDX87305 | nucleus |
| CDX88666 | |
| CDX89193 | |
| CDX90892 | nucleus |
| CDX96319 | |
| CDX97009 | nucleus |
| CDX97915 | |
| CDY02806 | |
| CDY03686 | |
| CDY03687 | |
| CDY05870 | |
| CDY11608 | endoplasmic reticulum |
| CDY12259 | |
| CDY12260 | |
| CDY14051 | |
| CDY18994 | |
| CDY19324 | |
| CDY20600 | |
| CDY20601 | |
| CDY20970 | |
| CDY21951 | nucleus |
| CDY22116 | nucleus |
| CDY22369 | nucleus |
| CDY29570 | nucleus |
| CDY29942 | |
| CDY31173 | |
| CDY32714 | |
| CDY32995 | |
| CDY34673 | |
| CDY34854 | |
| CDY37592 | nucleus |
| CDY37936 | |
| CDY37939 | |
| CDY38664 | nucleus |
| CDY38800 | endoplasmic reticulum |
| CDY39984 | nucleus |
| CDY43865 | |
| CDY48212 | nucleus |
| CDY49278 | nucleus |
| CDY55173 | |
| CDY55831 | |
| CDY57741 | nucleus |
| CDY58566 | |
| CDY59943 | endoplasmic reticulum |
| CDY61993 | nucleus |
| CDY64339 | |
| CDY66197 | |
| CDY66787 | |
| CDY67142 | endoplasmic reticulum |
| CDY67496 | |
| CDY69708 | nucleus |
| CDY70684 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84726 | Canola | nucleus | 81.85 | 82.19 |
| CDY23793 | Canola | nucleus | 71.37 | 72.54 |
| CDY19160 | Canola | nucleus | 63.71 | 65.02 |
| CDY59640 | Canola | nucleus | 27.02 | 53.17 |
| CDY12181 | Canola | nucleus | 49.6 | 51.46 |
| AT2G32710.1 | Thale cress | nucleus | 59.27 | 50.87 |
| HORVU3Hr1G064490.1 | Barley | nucleus | 14.11 | 48.61 |
| PGSC0003DMT400076291 | Potato | nucleus | 39.11 | 46.41 |
| Solyc09g091780.2.1 | Tomato | nucleus | 39.11 | 46.19 |
| Solyc12g098310.1.1 | Tomato | nucleus | 41.13 | 43.97 |
| Os10t0471700-02 | Rice | nucleus | 34.27 | 43.81 |
| PGSC0003DMT400019919 | Potato | nucleus | 41.13 | 43.59 |
| EER91497 | Sorghum | cytosol | 32.26 | 41.88 |
| CDX86277 | Canola | cytosol, mitochondrion, plastid | 18.15 | 41.67 |
| TraesCS1B01G168900.1 | Wheat | cytosol, nucleus, plastid | 33.87 | 41.38 |
| GSMUA_Achr1P00900_001 | Banana | nucleus | 31.45 | 41.27 |
| GSMUA_Achr8P12510_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 31.85 | 41.15 |
| Zm00001d014046_P001 | Maize | nucleus | 31.85 | 41.15 |
| KRG92238 | Soybean | nucleus | 37.1 | 41.07 |
| GSMUA_Achr5P20430_001 | Banana | nucleus | 31.45 | 41.05 |
| CDY71628 | Canola | nucleus | 32.66 | 40.7 |
| GSMUA_Achr11P... | Banana | nucleus | 32.66 | 40.5 |
| TraesCS1A01G151400.1 | Wheat | nucleus | 33.06 | 40.39 |
| TraesCS1D01G148400.2 | Wheat | cytosol, nucleus, plastid | 32.66 | 39.9 |
| GSMUA_Achr1P20410_001 | Banana | nucleus | 36.29 | 39.3 |
| HORVU5Hr1G031690.1 | Barley | extracellular | 17.34 | 39.09 |
| GSMUA_Achr11P... | Banana | nucleus | 29.03 | 38.3 |
| CDX93038 | Canola | nucleus | 30.65 | 38.19 |
| HORVU3Hr1G064580.1 | Barley | nucleus | 20.16 | 38.17 |
| CDY00044 | Canola | nucleus | 29.44 | 38.02 |
| CDY19935 | Canola | nucleus | 29.84 | 37.76 |
| Zm00001d048363_P001 | Maize | nucleus | 32.26 | 37.21 |
| GSMUA_Achr2P11790_001 | Banana | nucleus | 30.24 | 36.95 |
| CDX86276 | Canola | nucleus | 30.24 | 36.23 |
| Os03t0137800-01 | Rice | mitochondrion, nucleus, plastid | 32.26 | 36.2 |
| Zm00001d027585_P001 | Maize | nucleus | 31.05 | 36.15 |
| TraesCS5A01G506500.1 | Wheat | nucleus | 30.24 | 35.89 |
| GSMUA_Achr5P12920_001 | Banana | nucleus | 31.85 | 35.75 |
| EER95545 | Sorghum | nucleus | 30.65 | 35.68 |
| VIT_05s0029g00040.t01 | Wine grape | nucleus | 37.1 | 35.52 |
| GSMUA_Achr6P36640_001 | Banana | nucleus | 34.68 | 34.96 |
| CDX85366 | Canola | nucleus | 29.03 | 34.78 |
| GSMUA_Achr4P26490_001 | Banana | nucleus | 29.03 | 33.03 |
| HORVU1Hr1G040110.3 | Barley | nucleus, plastid | 25.0 | 31.31 |
| TraesCS4D01G332500.1 | Wheat | nucleus | 27.02 | 30.59 |
| GSMUA_Achr5P21770_001 | Banana | nucleus | 32.26 | 27.4 |
| Zm00001d032732_P002 | Maize | mitochondrion | 20.97 | 26.8 |
| HORVU4Hr1G080410.1 | Barley | nucleus | 30.65 | 20.38 |
Protein Annotations
| MapMan:13.1.1.3.1 | Gene3D:4.10.365.10 | GO:A0A078CRL0 | InterPro:CDI | EnsemblPlants:CDX79470 | ProteinID:CDX79470 |
| ProteinID:CDX79470.1 | GO:GO:0003674 | GO:GO:0004861 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007049 | GO:GO:0007050 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030234 |
| EnsemblPlantsGene:GSBRNA2T00132211001 | PFAM:PF02234 | PIRSF:PIRSF017811 | PANTHER:PTHR10265 | PANTHER:PTHR10265:SF41 | UniParc:UPI0004EDEBB7 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g18060D
Coordinates
chrLK031818:+:242779..244448
Molecular Weight (calculated)
27697.2 Da
IEP (calculated)
10.101
GRAVY (calculated)
-1.131
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKYIKKKKL DGEALSLIDV SPSPLGVLTR AKSLALQRRL QKPPSSPSPN PPPSKQKITD CSGGSYLQLR SRRLQKKPPP IVVIRSSKRR KQRREEEGRN
101: PNPNPQNHDS IRGSGGDGSS RSDSVAESVV FGKEKDFNGG INRELDGSES FNWTTSREST PCSLIRKQET ITSPGSSTKL SNGISDNSNQ REDSFSGSHR
201: HLPTTPEMDE FFSGAEEEQQ KQFIEKYNFD PVNEQPLPGR FEWKKVDD
101: PNPNPQNHDS IRGSGGDGSS RSDSVAESVV FGKEKDFNGG INRELDGSES FNWTTSREST PCSLIRKQET ITSPGSSTKL SNGISDNSNQ REDSFSGSHR
201: HLPTTPEMDE FFSGAEEEQQ KQFIEKYNFD PVNEQPLPGR FEWKKVDD
001: MGKYIRKSKI DGAGAGAGGG GGGGGGGESS IALMDVVSPS SSSSLGVLTR AKSLALQQQQ QRCLLQKPSS PSSLPPTSAS PNPPSKQKMK KKQQQMNDCG
101: SYLQLRSRRL QKKPPIVVIR STKRRKQQRR NETCGRNPNP RSNLDSIRGD GSRSDSVSES VVFGKDKDLI SEINKDPTFG QNFFDLEEEH TQSFNRTTRE
201: STPCSLIRRP EIMTTPGSST KLNICVSESN QREDSLSRSH RRRPTTPEMD EFFSGAEEEQ QKQFIEKYNF DPVNEQPLPG RFEWTKVDD
101: SYLQLRSRRL QKKPPIVVIR STKRRKQQRR NETCGRNPNP RSNLDSIRGD GSRSDSVSES VVFGKDKDLI SEINKDPTFG QNFFDLEEEH TQSFNRTTRE
201: STPCSLIRRP EIMTTPGSST KLNICVSESN QREDSLSRSH RRRPTTPEMD EFFSGAEEEQ QKQFIEKYNF DPVNEQPLPG RFEWTKVDD
Arabidopsis Description
KRP4Cyclin-dependent kinase inhibitor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.