Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85366 | Canola | nucleus | 83.33 | 43.48 |
| CDX86276 | Canola | nucleus | 79.63 | 41.55 |
| CDY59640 | Canola | nucleus | 41.67 | 35.71 |
| CDY00044 | Canola | nucleus | 62.96 | 35.42 |
| CDY19935 | Canola | nucleus | 62.04 | 34.18 |
| AT5G48820.2 | Thale cress | endoplasmic reticulum, nucleus, plasma membrane, plastid | 62.04 | 27.92 |
| Solyc09g061280.2.1 | Tomato | nucleus | 48.15 | 27.66 |
| PGSC0003DMT400045507 | Potato | nucleus | 48.15 | 26.26 |
| VIT_07s0005g06340.t01 | Wine grape | nucleus | 50.93 | 25.23 |
| CDY71628 | Canola | nucleus | 41.67 | 22.61 |
| CDX93038 | Canola | nucleus | 39.81 | 21.61 |
| CDY23793 | Canola | nucleus | 42.59 | 18.85 |
| CDX84726 | Canola | nucleus | 41.67 | 18.22 |
| CDX79470 | Canola | nucleus | 41.67 | 18.15 |
| CDY19160 | Canola | nucleus | 40.74 | 18.11 |
| CDY12181 | Canola | nucleus | 36.11 | 16.32 |
Protein Annotations
| MapMan:13.1.1.3.1 | Gene3D:4.10.365.10 | GO:A0A078DB45 | InterPro:CDI | EnsemblPlants:CDX86277 | ProteinID:CDX86277 |
| ProteinID:CDX86277.1 | GO:GO:0003674 | GO:GO:0004861 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007049 | GO:GO:0007050 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030234 |
| EnsemblPlantsGene:GSBRNA2T00144389001 | PFAM:PF02234 | PIRSF:PIRSF017811 | PANTHER:PTHR10265 | PANTHER:PTHR10265:SF23 | UniParc:UPI0004EE260D |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g29940D
Coordinates
chrLK031845:+:738236..740979
Molecular Weight (calculated)
12266.4 Da
IEP (calculated)
4.498
GRAVY (calculated)
-0.456
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMIRDVKTG LPAHLRPSPF TTRESTPCNF AEDLEIIVTP GSSTKSMRTA TRDCIRDGDS SVPSTSELEE FFAYAEQQQQ RLFMDKYNFD IVNDVPLAGR
101: YEWVQVSP
101: YEWVQVSP
001: MGKYMKKSKI TGDISVMEVS KATAPSPGVR TRAAKTLALK RLNSSAADSA LPNDSSCYLQ LRSRRLEKPS SLIEPKQPPR VHRSGIKESG SRSRVDSVNS
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP
Arabidopsis Description
KRP3Inhibitor/interactor with cyclin-dependent kinase [Source:UniProtKB/TrEMBL;Acc:F4K388]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.