Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX68497 | |
| CDX69600 | |
| CDX69832 | nucleus |
| CDX70546 | |
| CDX72643 | nucleus |
| CDX76164 | |
| CDX78564 | |
| CDX83047 | |
| CDX86537 | |
| CDX87018 | |
| CDX90892 | nucleus |
| CDX96319 | |
| CDX97009 | nucleus |
| CDY03686 | |
| CDY03687 | |
| CDY05870 | |
| CDY10170 | |
| CDY11608 | endoplasmic reticulum |
| CDY13189 | |
| CDY14051 | |
| CDY15560 | |
| CDY21951 | nucleus |
| CDY22116 | nucleus |
| CDY29570 | nucleus |
| CDY37936 | |
| CDY37939 | |
| CDY38800 | endoplasmic reticulum |
| CDY47713 | |
| CDY55173 | |
| CDY58407 | |
| CDY59943 | endoplasmic reticulum |
| CDY66197 | |
| CDY66787 | |
| CDY67142 | endoplasmic reticulum |
| CDY67496 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013240.1-P | Field mustard | nucleus | 99.5 | 99.5 |
| CDY71628 | Canola | nucleus | 92.46 | 92.46 |
| AT3G24810.1 | Thale cress | nucleus | 53.77 | 56.61 |
| CDY00044 | Canola | nucleus | 40.7 | 42.19 |
| CDY19935 | Canola | nucleus | 40.2 | 40.82 |
| KRG99786 | Soybean | nucleus | 41.21 | 40.0 |
| CDX86277 | Canola | cytosol, mitochondrion, plastid | 21.61 | 39.81 |
| PGSC0003DMT400045507 | Potato | nucleus | 38.69 | 38.89 |
| CDX85366 | Canola | nucleus | 40.2 | 38.65 |
| KRH46746 | Soybean | nucleus | 38.69 | 38.31 |
| Solyc09g061280.2.1 | Tomato | nucleus | 36.18 | 38.3 |
| CDX86276 | Canola | nucleus | 39.7 | 38.16 |
| CDX84726 | Canola | nucleus | 40.7 | 32.79 |
| VIT_07s0005g06340.t01 | Wine grape | nucleus | 35.68 | 32.57 |
| CDY59640 | Canola | nucleus | 20.6 | 32.54 |
| CDY23793 | Canola | nucleus | 38.69 | 31.56 |
| CDY12181 | Canola | nucleus | 37.19 | 30.96 |
| CDY19160 | Canola | nucleus | 37.69 | 30.86 |
| CDX79470 | Canola | nucleus | 38.19 | 30.65 |
Protein Annotations
| MapMan:13.1.1.3.1 | Gene3D:4.10.365.10 | GO:A0A078E0G2 | InterPro:CDI | EnsemblPlants:CDX93038 | ProteinID:CDX93038 |
| ProteinID:CDX93038.1 | GO:GO:0003674 | GO:GO:0004861 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007049 | GO:GO:0007050 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030234 |
| EnsemblPlantsGene:GSBRNA2T00154933001 | PFAM:PF02234 | PIRSF:PIRSF017811 | PANTHER:PTHR10265 | PANTHER:PTHR10265:SF23 | UniParc:UPI0004EE4C4F |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g37600D
Coordinates
chrLK031874:+:842914..844089
Molecular Weight (calculated)
22409.4 Da
IEP (calculated)
9.230
GRAVY (calculated)
-0.702
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRYIKKSKI AGGALPAKDI SHQTASSFRT RAAKNLALQR LRSHSTPPCV DADSFRYLQL RSRRLVKLPL LADTRKQQQK QLINSVGKRQ TTNPRANSVL
101: LSEPTNLEED CGSNLVNSGS GCSFGEKGLE FESGDRETTP CSLKRDSEEA IQSVPSHEIE DFFAFAEQQQ QRFFTEKYNF DIVSENPLPG RYEWIKVVP
101: LSEPTNLEED CGSNLVNSGS GCSFGEKGLE FESGDRETTP CSLKRDSEEA IQSVPSHEIE DFFAFAEQQQ QRFFTEKYNF DIVSENPLPG RYEWIKVVP
001: MGKYIKKSKV AGAVSVKDKS HPPALGFRTR AAAAKNLALH RLRSHSDEAD SFNYLQLRSR RLVKLPLLTN TRKQQKQQLI PSVNQCQTKN PRASSGPAKK
101: LEPDTTTEEA CGDNERISRS DCNFGDKGFD LESENRSMIS DSKSIQSEIE DFFASAEQQQ QRFFIQKYNF DIVSDNPLPG RYEWVKVMP
101: LEPDTTTEEA CGDNERISRS DCNFGDKGFD LESENRSMIS DSKSIQSEIE DFFASAEQQQ QRFFIQKYNF DIVSDNPLPG RYEWVKVMP
Arabidopsis Description
KRP5Cyclin-dependent kinase inhibitor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.