Factsheet for VIT_07s0005g06340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00210.t01	nucleus
VIT_01s0026g00710.t01	endoplasmic reticulum
VIT_05s0102g01120.t01
VIT_07s0129g00200.t01	nucleus
VIT_08s0056g00210.t01
VIT_12s0134g00500.t01	nucleus
VIT_14s0068g02140.t01
VIT_15s0045g00310.t01
VIT_17s0000g00200.t01
VIT_18s0089g00210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24810.1	VIT_05s0102g01120.t01	AT1G06070.1	20706207
AT3G24810.1	VIT_01s0026g00710.t01	AT1G70210.1	20407024
AT3G24810.1	VIT_18s0089g00210.t01	AT1G71380.1	20706207
AT3G24810.1	VIT_15s0045g00310.t01	AT3G48750.1	10758489
AT3G24810.1	VIT_15s0045g00310.t01	AT3G48750.1	20706207
AT3G24810.1	VIT_15s0045g00310.t01	AT3G48750.1	9753775
AT3G24810.1	VIT_08s0056g00210.t01	AT3G54180.1	10758489
AT3G24810.1	VIT_12s0134g00500.t01	AT4G03270.1	20407024
AT3G24810.1	VIT_07s0129g00200.t01	AT4G37630.1	20407024
AT3G24810.1	VIT_17s0000g00200.t01	AT5G07310.1	20706207
AT3G24810.1	VIT_00s0199g00210.t01	AT5G10440.1	20407024
AT3G24810.1	VIT_14s0068g02140.t01	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036159.1-P	Field mustard	nucleus	49.54	56.25
CDY00044	Canola	nucleus	47.25	53.65
CDY19935	Canola	nucleus	47.25	52.55
CDX86277	Canola	cytosol, mitochondrion, plastid	25.23	50.93
PGSC0003DMT400045507	Potato	nucleus	45.87	50.51
KRH46746	Soybean	nucleus	45.87	49.75
Solyc09g061280.2.1	Tomato	nucleus	42.66	49.47
CDX85366	Canola	nucleus	46.33	48.79
KRG99786	Soybean	nucleus	45.87	48.78
Bra037459.1-P	Field mustard	nucleus	45.87	48.31
CDX86276	Canola	nucleus	45.87	48.31
VIT_05s0029g00040.t01	Wine grape	nucleus	53.67	45.17
AT5G48820.2	Thale cress	endoplasmic reticulum, nucleus, plasma membrane, plastid	47.71	43.33
CDY71628	Canola	nucleus	33.49	36.68
CDX93038	Canola	nucleus	32.57	35.68
Bra013240.1-P	Field mustard	nucleus	32.57	35.68
AT3G24810.1	Thale cress	nucleus	30.28	34.92

Protein Annotations

EntrezGene:100854136	wikigene:100854136	MapMan:13.1.1.3.1	Gene3D:4.10.365.10	ProteinID:CBI37311	ProteinID:CBI37311.3
InterPro:CDI	UniProt:D7U3J2	EMBL:FN596502	GO:GO:0003674	GO:GO:0004860	GO:GO:0004861
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006469
GO:GO:0007049	GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0030234	GO:GO:0071901	EntrezGene:LOC100854136	wikigene:LOC100854136	PFAM:PF02234	PIRSF:PIRSF017811
PANTHER:PTHR10265	PANTHER:PTHR10265:SF41	TIGR:TC65314	UniParc:UPI00015CBD8C	ArrayExpress:VIT_07s0005g06340	EnsemblPlantsGene:VIT_07s0005g06340
EnsemblPlants:VIT_07s0005g06340.t01	unigene:Vvi.5606	RefSeq:XP_003632370	RefSeq:XP_003632370.1	SEG:seg	:

Description

Cyclin-dependent kinase inhibitor [Source:UniProtKB/TrEMBL;Acc:D7U3J2]

Coordinates

chr7:-:11461487..11464937

Molecular Weight (calculated)

24105.3 Da

IEP (calculated)

6.810

GRAVY (calculated)

-0.755

Length

218 amino acids

Sequence
(BLAST)

001: MGKYMKKAKI TGDVTVMEVS SSLGVRTRAK TLALQRLQKT THQEGPKPDT SYLELRSRRL EKPPLLSEPN KKQNPNPKAS SRVELGSVNS NSVGSVPPGE
101: KINAVETEDV GVEASYGENV LEFEGRDRST RESTPCSLIR DPDTIATPGS TTRPSSSSVT TRRVRSNVLG DIPTAAELEE FFTHAEEHAQ KEFMDKYNFD
201: IVNDTPLPGR FEWVQVSP

Best Arabidopsis Sequence Match ( AT5G48820.1 )
(BLAST)

001: MGKYMKKSKI TGDISVMEVS KATAPSPGVR TRAAKTLALK RLNSSAADSA LPNDSSCYLQ LRSRRLEKPS SLIEPKQPPR VHRSGIKESG SRSRVDSVNS
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP

Arabidopsis Description

KRP3Inhibitor/interactor with cyclin-dependent kinase [Source:UniProtKB/TrEMBL;Acc:F4K388]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.