Factsheet for PGSC0003DMT400045507

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400017831
PGSC0003DMT400021687
PGSC0003DMT400036934
PGSC0003DMT400037827	nucleus
PGSC0003DMT400039033	nucleus
PGSC0003DMT400040287	endoplasmic reticulum
PGSC0003DMT400041637	nucleus
PGSC0003DMT400071215
PGSC0003DMT400077428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24810.1	PGSC0003DMT400040287	AT1G70210.1	20407024
AT3G24810.1	PGSC0003DMT400021687	AT1G71380.1	20706207
AT3G24810.1	PGSC0003DMT400077428	AT3G48750.1	10758489
AT3G24810.1	PGSC0003DMT400077428	AT3G48750.1	20706207
AT3G24810.1	PGSC0003DMT400077428	AT3G48750.1	9753775
AT3G24810.1	PGSC0003DMT400071215	AT3G54180.1	10758489
AT3G24810.1	PGSC0003DMT400039033	AT4G03270.1	20407024
AT3G24810.1	PGSC0003DMT400036934	AT5G07310.1	20706207
AT3G24810.1	PGSC0003DMT400037827	AT5G10440.1	20407024
AT3G24810.1	PGSC0003DMT400041637	AT5G10440.1	20407024
AT3G24810.1	PGSC0003DMT400017831	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g061280.2.1	Tomato	nucleus	75.25	79.26
CDX86277	Canola	cytosol, mitochondrion, plastid	26.26	48.15
KRH46746	Soybean	nucleus	47.98	47.26
CDY00044	Canola	nucleus	45.45	46.88
Bra036159.1-P	Field mustard	nucleus	44.95	46.35
VIT_07s0005g06340.t01	Wine grape	nucleus	50.51	45.87
KRG99786	Soybean	nucleus	47.47	45.85
CDY19935	Canola	nucleus	44.44	44.9
CDX85366	Canola	nucleus	45.96	43.96
CDX86276	Canola	nucleus	45.45	43.48
Bra037459.1-P	Field mustard	nucleus	45.45	43.48
PGSC0003DMT400076291	Potato	nucleus	45.45	43.06
AT5G48820.2	Thale cress	endoplasmic reticulum, nucleus, plasma membrane, plastid	48.48	40.0
CDY71628	Canola	nucleus	39.39	39.2
PGSC0003DMT400019919	Potato	nucleus	45.96	38.89
CDX93038	Canola	nucleus	38.89	38.69
Bra013240.1-P	Field mustard	nucleus	38.89	38.69
AT3G24810.1	Thale cress	nucleus	31.31	32.8

Protein Annotations

EntrezGene:102584538	MapMan:13.1.1.3.1	Gene3D:4.10.365.10	InterPro:CDI	GO:GO:0003674	GO:GO:0004860
GO:GO:0004861	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006469	GO:GO:0007049	GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0030234	GO:GO:0071901	UniProt:M1BHS3	PFAM:PF02234	EnsemblPlantsGene:PGSC0003DMG400017654
PGSC:PGSC0003DMG400017654	EnsemblPlants:PGSC0003DMT400045507	PIRSF:PIRSF017811	PANTHER:PTHR10265	PANTHER:PTHR10265:SF23	UniParc:UPI00029696CF
RefSeq:XP_006356769.1	SEG:seg	:	:	:	:

Description

Cyclin-dependent kinase inhibitor 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400017654]

Coordinates

chr9:-:43963815..43966707

Molecular Weight (calculated)

22540.3 Da

IEP (calculated)

8.244

GRAVY (calculated)

-0.795

Length

198 amino acids

Sequence
(BLAST)

001: MGKYLRKTGD VMESSLGVRT RARTLALQRL QSSSSTPPPL SSASDSCYLQ LRSRRLHKPP TPIPNPENSN SHPESVSVGS VSINQKGWVT EDEISFGENN
101: LDSEHRDRST RESTPCSLVR EVDAMVNPGS ATRRTELNTT TQRTRSFILR NIPSAHEIEE FFTFAEQQQQ RLFMEKYNFD VVNDVPLSGR YEWIRVNH

Best Arabidopsis Sequence Match ( AT5G48820.1 )
(BLAST)

001: MGKYMKKSKI TGDISVMEVS KATAPSPGVR TRAAKTLALK RLNSSAADSA LPNDSSCYLQ LRSRRLEKPS SLIEPKQPPR VHRSGIKESG SRSRVDSVNS
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP

Arabidopsis Description

KRP3Inhibitor/interactor with cyclin-dependent kinase [Source:UniProtKB/TrEMBL;Acc:F4K388]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.