Factsheet for VIT_05s0029g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00210.t01	nucleus
VIT_01s0026g00710.t01	endoplasmic reticulum
VIT_03s0180g00040.t01	nucleus
VIT_05s0062g01080.t01
VIT_06s0004g08220.t01
VIT_07s0129g00200.t01	nucleus
VIT_07s0129g01100.t01	nucleus
VIT_07s0141g00330.t01
VIT_09s0002g05240.t01	nucleus
VIT_12s0057g00240.t01
VIT_12s0134g00500.t01	nucleus
VIT_15s0045g00310.t01
VIT_17s0000g00200.t01
VIT_18s0001g09580.t01	nucleus
VIT_18s0089g00210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32710.1	VIT_05s0062g01080.t01	AT1G10840.1	20706207
AT2G32710.1	VIT_01s0026g00710.t01	AT1G70210.1	20407024
AT2G32710.1	VIT_18s0089g00210.t01	AT1G71380.1	20706207
AT2G32710.1	VIT_09s0002g05240.t01	AT1G80370.1	20407024
AT2G32710.1	VIT_15s0045g00310.t01	AT3G48750.1	11449057
AT2G32710.1	VIT_15s0045g00310.t01	AT3G48750.1	20706207
AT2G32710.1	VIT_07s0141g00330.t01	AT3G54650.1	18948957
AT2G32710.1	VIT_12s0134g00500.t01	AT4G03270.1	20407024
AT2G32710.1	VIT_12s0057g00240.t01	AT4G28230.1	20706207
AT2G32710.1	VIT_03s0180g00040.t01	AT4G34160.1	20407024
AT2G32710.1	VIT_07s0129g01100.t01	AT4G34160.1	20407024
AT2G32710.1	VIT_07s0129g00200.t01	AT4G37630.1	20407024
AT2G32710.1	VIT_17s0000g00200.t01	AT5G07310.1	20706207
AT2G32710.1	VIT_00s0199g00210.t01	AT5G10440.1	20407024
AT2G32710.1	VIT_18s0001g09580.t01	AT5G43080.1	20407024
AT2G32710.1	VIT_06s0004g08220.t01	AT5G58290.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g06340.t01	Wine grape	nucleus	45.17	53.67
GSMUA_Achr8P12510_001	Banana	cytosol, mitochondrion, nucleus, plastid	38.22	51.56
GSMUA_Achr11P...	Banana	nucleus	37.84	49.0
GSMUA_Achr5P20430_001	Banana	nucleus	35.52	48.42
EER91497	Sorghum	cytosol	35.52	48.17
EER95545	Sorghum	nucleus	39.38	47.89
TraesCS1D01G148400.2	Wheat	cytosol, nucleus, plastid	37.45	47.78
KRG92238	Soybean	nucleus	40.93	47.32
Os10t0471700-02	Rice	nucleus	35.14	46.91
Zm00001d014046_P001	Maize	nucleus	34.75	46.88
TraesCS1B01G168900.1	Wheat	cytosol, nucleus, plastid	36.29	46.31
HORVU3Hr1G064490.1	Barley	nucleus	12.74	45.83
TraesCS1A01G151400.1	Wheat	nucleus	35.91	45.81
GSMUA_Achr11P...	Banana	nucleus	33.2	45.74
Zm00001d048363_P001	Maize	nucleus	37.84	45.58
PGSC0003DMT400076291	Potato	nucleus	36.68	45.45
Solyc09g091780.2.1	Tomato	nucleus	36.68	45.24
GSMUA_Achr1P00900_001	Banana	nucleus	32.82	44.97
Os03t0137800-01	Rice	mitochondrion, nucleus, plastid	38.22	44.8
Zm00001d027585_P001	Maize	nucleus	36.68	44.6
GSMUA_Achr2P11790_001	Banana	nucleus	33.98	43.35
Solyc12g098310.1.1	Tomato	nucleus	38.61	43.1
TraesCS5A01G506500.1	Wheat	nucleus	34.75	43.06
CDY59640	Canola	nucleus	20.85	42.86
PGSC0003DMT400019919	Potato	nucleus	38.61	42.73
GSMUA_Achr4P26490_001	Banana	nucleus	35.14	41.74
GSMUA_Achr5P12920_001	Banana	nucleus	35.52	41.63
HORVU5Hr1G031690.1	Barley	extracellular	16.99	40.0
CDY23793	Canola	nucleus	37.45	39.75
TraesCS4D01G332500.1	Wheat	nucleus	32.82	38.81
GSMUA_Achr1P20410_001	Banana	nucleus	33.59	37.99
Bra021808.1-P	Field mustard	nucleus	35.14	37.92
CDY19160	Canola	nucleus	35.52	37.86
HORVU3Hr1G064580.1	Barley	nucleus	18.92	37.4
GSMUA_Achr6P36640_001	Banana	nucleus	35.52	37.4
CDX84726	Canola	nucleus	35.52	37.25
Bra022897.1-P	Field mustard	nucleus	35.91	37.2
CDX79470	Canola	nucleus	35.52	37.1
Bra005565.1-P	Field mustard	nucleus	32.05	36.73
CDY12181	Canola	nucleus	31.66	34.31
AT2G32710.1	Thale cress	nucleus	38.22	34.26
HORVU1Hr1G040110.3	Barley	nucleus, plastid	25.87	33.84
GSMUA_Achr5P21770_001	Banana	nucleus	36.29	32.19
Zm00001d032732_P002	Maize	mitochondrion	21.24	28.35
HORVU4Hr1G080410.1	Barley	nucleus	33.98	23.59

Protein Annotations

EntrezGene:100245147	wikigene:100245147	MapMan:13.1.1.3.1	Gene3D:4.10.365.10	EMBL:AM460835	ProteinID:CAN70215
ProteinID:CAN70215.1	ProteinID:CCB44330	ProteinID:CCB44330.1	InterPro:CDI	UniProt:F6GWG7	EMBL:FN594958
GO:GO:0003674	GO:GO:0004861	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0007049	GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0030234	GO:GO:0071901	EntrezGene:LOC100245147	wikigene:LOC100245147	PFAM:PF02234
PIRSF:PIRSF017811	PANTHER:PTHR10265	PANTHER:PTHR10265:SF40	TIGR:TC57303	TIGR:TC58852	UniParc:UPI0002108683
ArrayExpress:VIT_05s0029g00040	EnsemblPlantsGene:VIT_05s0029g00040	EnsemblPlants:VIT_05s0029g00040.t01	unigene:Vvi.6615	RefSeq:XP_002268785	RefSeq:XP_002268785.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:14028502..14031485

Molecular Weight (calculated)

28827.1 Da

IEP (calculated)

10.255

GRAVY (calculated)

-0.839

Length

259 amino acids

Sequence
(BLAST)

001: MRKAKARGEV AVMEVSQPCL GVRTRAKTLA LERLQKSRPR PSPPQSPPQQ QASSSSYLQL RSRRLLKPPI LVSNSKKHKQ NLKEVDVENP NPKVKARASS
101: RLRVGSVRCG SVGSVSLGCL SGEDGVQSPA VDLLKLGKEE QILEDNNAND LGIEASFGEN VLDFEARDRS TRETTPCSLI RDPETIRTPG STTKPASSSG
201: INRRMDNSRQ GHVPTTQEMD QFFQSAEEEQ QRVFTDKYNF DPVNDKPLSG RFEWVKLNR

Best Arabidopsis Sequence Match ( AT5G48820.1 )
(BLAST)

001: MGKYMKKSKI TGDISVMEVS KATAPSPGVR TRAAKTLALK RLNSSAADSA LPNDSSCYLQ LRSRRLEKPS SLIEPKQPPR VHRSGIKESG SRSRVDSVNS
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP

Arabidopsis Description

KRP3Inhibitor/interactor with cyclin-dependent kinase [Source:UniProtKB/TrEMBL;Acc:F4K388]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.