Factsheet for HORVU1Hr1G040110.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G003280.5	nucleus
HORVU2Hr1G014000.1
HORVU2Hr1G068360.8
HORVU2Hr1G077130.1
HORVU2Hr1G107280.1
HORVU3Hr1G067470.2
HORVU3Hr1G114440.21	nucleus
HORVU4Hr1G013320.1	nucleus
HORVU4Hr1G013700.2	nucleus
HORVU4Hr1G069310.3	nucleus
HORVU4Hr1G085830.4
HORVU5Hr1G014320.7
HORVU5Hr1G018180.1	nucleus
HORVU5Hr1G018820.2	nucleus
HORVU5Hr1G050270.8	nucleus
HORVU5Hr1G059770.2	endoplasmic reticulum
HORVU5Hr1G093570.1
HORVU5Hr1G093590.1
HORVU6Hr1G013680.2
HORVU6Hr1G077500.1	nucleus
HORVU7Hr1G117300.3	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32710.1	HORVU2Hr1G068360.8	AT1G10840.1	20706207
AT2G32710.1	HORVU5Hr1G059770.2	AT1G70210.1	20407024
AT2G32710.1	HORVU2Hr1G077130.1	AT1G71380.1	20706207
AT2G32710.1	HORVU3Hr1G114440.21	AT1G80370.1	20407024
AT2G32710.1	HORVU4Hr1G085830.4	AT3G48750.1	11449057
AT2G32710.1	HORVU6Hr1G013680.2	AT3G48750.1	11449057
AT2G32710.1	HORVU4Hr1G085830.4	AT3G48750.1	20706207
AT2G32710.1	HORVU6Hr1G013680.2	AT3G48750.1	20706207
AT2G32710.1	HORVU5Hr1G014320.7	AT3G54650.1	18948957
AT2G32710.1	HORVU5Hr1G093570.1	AT3G54650.1	18948957
AT2G32710.1	HORVU5Hr1G093590.1	AT3G54650.1	18948957
AT2G32710.1	HORVU0Hr1G003280.5	AT4G03270.1	20407024
AT2G32710.1	HORVU7Hr1G117300.3	AT4G03270.1	20407024
AT2G32710.1	HORVU5Hr1G050270.8	AT4G34160.1	20407024
AT2G32710.1	HORVU4Hr1G013700.2	AT4G37630.1	20407024
AT2G32710.1	HORVU5Hr1G018180.1	AT4G37630.1	20407024
AT2G32710.1	HORVU6Hr1G077500.1	AT5G10440.1	20407024
AT2G32710.1	HORVU4Hr1G013320.1	AT5G43080.1	20407024
AT2G32710.1	HORVU4Hr1G069310.3	AT5G43080.1	20407024
AT2G32710.1	HORVU5Hr1G018820.2	AT5G43080.1	20407024
AT2G32710.1	HORVU2Hr1G014000.1	AT5G58290.1	20706207
AT2G32710.1	HORVU2Hr1G107280.1	AT5G58290.1	20706207
AT2G32710.1	HORVU3Hr1G067470.2	AT5G58290.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G064490.1	Barley	nucleus	20.71	56.94
TraesCS1D01G148400.2	Wheat	cytosol, nucleus, plastid	51.01	49.75
TraesCS1B01G168900.1	Wheat	cytosol, nucleus, plastid	51.01	49.75
TraesCS1A01G151400.1	Wheat	nucleus	50.0	48.77
HORVU5Hr1G031690.1	Barley	extracellular	25.76	46.36
Os10t0471700-02	Rice	nucleus	42.93	43.81
Zm00001d014046_P001	Maize	nucleus	41.41	42.71
EER91497	Sorghum	cytosol	39.9	41.36
HORVU3Hr1G064580.1	Barley	nucleus	27.27	41.22
GSMUA_Achr8P12510_001	Banana	cytosol, mitochondrion, nucleus, plastid	34.85	35.94
CDY59640	Canola	nucleus	22.22	34.92
GSMUA_Achr11P...	Banana	nucleus	34.85	34.5
GSMUA_Achr5P20430_001	Banana	nucleus	32.32	33.68
GSMUA_Achr1P00900_001	Banana	nucleus	31.82	33.33
GSMUA_Achr2P11790_001	Banana	nucleus	32.32	31.53
KRG92238	Soybean	nucleus	34.85	30.8
PGSC0003DMT400076291	Potato	nucleus	31.82	30.14
Solyc09g091780.2.1	Tomato	nucleus	31.82	30.0
GSMUA_Achr5P12920_001	Banana	nucleus	32.83	29.41
GSMUA_Achr11P...	Banana	nucleus	27.27	28.72
GSMUA_Achr4P26490_001	Banana	nucleus	31.31	28.44
PGSC0003DMT400019919	Potato	nucleus	32.32	27.35
Solyc12g098310.1.1	Tomato	nucleus	31.31	26.72
VIT_05s0029g00040.t01	Wine grape	nucleus	33.84	25.87
CDY23793	Canola	nucleus	30.81	25.0
CDX79470	Canola	nucleus	31.31	25.0
CDY19160	Canola	nucleus	30.3	24.69
Bra005565.1-P	Field mustard	nucleus	27.78	24.34
Bra021808.1-P	Field mustard	nucleus	29.29	24.17
Bra022897.1-P	Field mustard	nucleus	30.3	24.0
CDX84726	Canola	nucleus	29.29	23.48
CDY12181	Canola	nucleus	26.26	21.76
AT2G32710.1	Thale cress	nucleus	29.8	20.42
HORVU4Hr1G080410.1	Barley	nucleus	35.35	18.77

Protein Annotations

MapMan:13.1.1.3.1	Gene3D:4.10.365.10	UniProt:A0A287F849	InterPro:CDI	GO:GO:0003674	GO:GO:0004861
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007049
GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234
GO:GO:0071901	EnsemblPlantsGene:HORVU1Hr1G040110	EnsemblPlants:HORVU1Hr1G040110.3	PFAM:PF02234	PANTHER:PTHR10265	PANTHER:PTHR10265:SF41
UniParc:UPI000B46F49D	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:283841765..283844697

Molecular Weight (calculated)

22398.4 Da

IEP (calculated)

12.130

GRAVY (calculated)

-0.971

Length

198 amino acids

Sequence
(BLAST)

001: WASTCASPRS PARWPSWRSP PRRWGSAPAR ERSRCRGSRR GRRGPSTRGS TWSSGAGSLR SCPRRHRRGG GRPRRSALRP RPMRLSLLWV LEGEKNVMSR
101: NVYVCSVATR STRETTPCSL IRDQGTISTP GSTTRPSHSN SHRRVQAPAR HIIPCSAEMN EFFSAAEQPQ QQAFIDKYNF DPVNDCPLPG RYEWVKLD

Best Arabidopsis Sequence Match ( AT2G32710.2 )
(BLAST)

001: MGKYIRKSKI DGAGAGAGGG GGGGGGGESS IALMDVVSPS SSSSLGVLTR AKSLALQQQQ QRCLLQKPSS PSSLPPTSAS PNPPSKQKMK KKQQQMNDCG
101: SYLQLRSRRL QKKPPIVVIR STKRRKQQRR NETCGRNPNP RSNLDSIRGD GSRSDSVSES VVFGKDKDLI SEINKDPTFG QNFFDLEEEH TQRTTRESTP
201: CSLIRRPEIM TTPGSSTKLN ICVSESNQRE DSLSRSHRRR PTTPEMDEFF SGAEEEQQKQ FIEKYNFDPV NEQPLPGRFE WTKVDD

Arabidopsis Description

KRP4Cyclin-dependent kinase inhibitor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.