CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79470	nucleus
CDX84726	nucleus
CDY12181	nucleus
CDY19160	nucleus
CDY23793	nucleus
CDY46075	nucleus
CDY59640	nucleus
CDY63966	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80370.1	CDY46075	AT2G23430.1	20018602
AT1G80370.1	CDY63966	AT2G23430.1	20018602
AT1G80370.1	CDX79470	AT2G32710.1	20018602
AT1G80370.1	CDX84726	AT2G32710.1	20018602
AT1G80370.1	CDY12181	AT2G32710.1	20018602
AT1G80370.1	CDY19160	AT2G32710.1	20018602
AT1G80370.1	CDY23793	AT2G32710.1	20018602
AT1G80370.1	CDY59640	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008477.1-P	Field mustard	plastid	98.03	98.03
CDY38664	Canola	nucleus, plastid	96.28	96.7
CDX79389	Canola	plastid	79.43	83.83
CDX67944	Canola	plastid	78.99	83.56
CDY39984	Canola	plastid	80.31	81.92
CDX87305	Canola	plastid	81.84	80.95
AT1G80370.1	Thale cress	plastid	79.87	79.18
CDY48212	Canola	nucleus	63.9	77.45
CDY61993	Canola	nucleus	63.68	77.19
CDY66415	Canola	nucleus	66.96	70.51
CDY36574	Canola	mitochondrion, nucleus	66.3	69.5
CDY53304	Canola	plastid	62.14	69.44
CDX81722	Canola	nucleus, plastid	61.05	69.23
CDX96836	Canola	nucleus, plastid	66.08	68.64
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	35.01	64.78
VIT_09s0002g05240.t01	Wine grape	nucleus	57.77	53.88
KRH47513	Soybean	nucleus	53.83	51.68
KRH44391	Soybean	nucleus	51.42	49.89
PGSC0003DMT400006576	Potato	nucleus	49.67	49.03
Solyc03g120440.1.1	Tomato	nucleus, plastid	48.58	48.47
CDY06752	Canola	nucleus	29.98	48.07
CDX87087	Canola	plastid	43.76	47.96
CDX97090	Canola	nucleus	45.3	47.48
CDX69768	Canola	nucleus, plastid	44.42	46.45
OQU77084	Sorghum	nucleus	48.14	45.08
Os12t0502300-01	Rice	nucleus, plastid	48.14	44.9
CDY22369	Canola	nucleus	34.35	44.73
Zm00001d014756_P006	Maize	nucleus, plastid	48.58	42.61
TraesCS5D01G121100.2	Wheat	plastid	47.26	42.52
TraesCSU01G054300.1	Wheat	nucleus	46.61	42.52
CDY17091	Canola	nucleus	33.26	42.46
TraesCS5B01G114300.2	Wheat	plastid	47.05	42.41
TraesCS3A01G523600.1	Wheat	plastid	46.83	42.21
CDY62408	Canola	nucleus, plasma membrane, plastid	19.47	42.18
GSMUA_Achr3P25340_001	Banana	nucleus	49.89	42.07
CDY17037	Canola	nucleus, plastid	33.48	42.03
TraesCS3D01G529100.1	Wheat	plastid	46.39	41.98
TraesCS5A01G108500.2	Wheat	plastid	46.61	41.93
HORVU3Hr1G114440.21	Barley	nucleus, plastid	46.17	41.62
CDX88368	Canola	plastid	34.35	41.32
CDY47595	Canola	nucleus, plastid	33.48	41.24
KXG23504	Sorghum	mitochondrion, nucleus	43.54	41.2
CDY23653	Canola	nucleus	31.73	40.62
CDY66770	Canola	nucleus	32.17	40.61
CDX87520	Canola	nucleus	34.14	40.41
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	42.89	40.41
CDX85466	Canola	plastid	37.2	40.28
CDY47596	Canola	nucleus	31.95	40.22
CDY17039	Canola	nucleus	31.95	40.22
CDY06757	Canola	nucleus, plastid	31.73	39.94
CDY02719	Canola	plastid	36.76	39.16
CDY41784	Canola	plastid	28.88	38.82
CDY31481	Canola	nucleus	18.16	38.25
CDY65994	Canola	plastid	36.32	37.47
CDX92090	Canola	mitochondrion, nucleus	29.1	37.25
CDY25649	Canola	plastid	35.45	37.07
CDX72551	Canola	nucleus	25.82	29.43
CDY33634	Canola	nucleus	26.26	29.41
CDX85942	Canola	nucleus	26.26	29.41
CDX96631	Canola	nucleus	26.26	29.27
CDY67210	Canola	nucleus	25.6	28.82
CDY29520	Canola	nucleus	25.82	28.78
CDY62475	Canola	nucleus	21.88	28.49
CDY69551	Canola	nucleus	22.1	28.45
CDY30357	Canola	nucleus	24.95	27.87
CDX88261	Canola	nucleus	26.04	27.67
CDX87612	Canola	nucleus	26.04	27.61
CDY26816	Canola	nucleus	24.51	27.52
CDY29184	Canola	nucleus	25.16	27.45
CDX68105	Canola	nucleus	23.63	27.34
CDY07838	Canola	nucleus	24.95	27.27
CDX69311	Canola	nucleus	23.85	26.01
CDY11354	Canola	plastid	24.07	25.4
CDX75659	Canola	nucleus	23.63	25.23
CDX80988	Canola	plastid	23.41	25.0
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	44.2	20.42
CDY33338	Canola	nucleus	25.38	19.86
CDY35083	Canola	cytosol, endoplasmic reticulum, nucleus	24.95	18.72
CDX96819	Canola	nucleus	24.95	17.67
CDX83953	Canola	nucleus	24.29	16.95
CDY14091	Canola	plastid	23.63	16.46
CDY04980	Canola	nucleus	23.85	15.18

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	GO:A0A078HIE4	UniProt:A0A078HIE4	EnsemblPlants:CDY37592	ProteinID:CDY37592
ProteinID:CDY37592.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00064226001	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF346	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI0004EE9932	SEG:seg	:	:	:	:

Description

BnaA02g19780DBnaA02g19780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIE4]

Coordinates

chrLK032403:+:208409..210565

Molecular Weight (calculated)

51051.2 Da

IEP (calculated)

8.768

GRAVY (calculated)

-0.229

Length

457 amino acids

Sequence
(BLAST)

001: MGKEKAVSGN TTIPLLARPI TRALASALRA SSKLITSSDV AAITLINKGM VLRANSKRTA LDDTTTNAPK KQRAVLKDIS NVTCENSHTT SCASAAKTQV
101: ENVKQIEKGR AGSSKVASSS TTSEVTDNAK SQVVSDSAGV SLSGCTGTNK ASCSFSRLPP RPPVRSTSST VETSSPKFID IDSDVKDPLL CSLYAPEIHY
201: NLRVAELKRR PCPGFMERTQ RDVTQTMRGI LVDWLVEVSE EYTLVPDTLY LTVYLIDWFL QGNYMERQRL QLLGVTCMLI ASKYEEINAP RIEEFCSITD
301: NTYTRDEVLE MESQVLKHFS FQIYTPTSKT FLRRFLRAAQ ASHFMMPSVE MEFLANYLTE LTLVEYEFLK YLPSVIAASA VFLAKWTVNQ SSHPWNPTLE
401: HYTTYKASDL KACVEALQEL QLNTKGCPLN SIRMKYRQDK FKSVAVFISP KLPDRLF

Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)

001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

Arabidopsis Description

CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.