Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17620.1 | CDX87588 | AT1G76540.1 | 12857813 |
| AT2G17620.1 | CDX88294 | AT1G76540.1 | 12857813 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29184 | Canola | nucleus | 96.89 | 96.66 |
| CDY30357 | Canola | nucleus | 82.06 | 83.86 |
| CDY26816 | Canola | nucleus | 81.58 | 83.78 |
| AT2G17620.1 | Thale cress | nucleus | 85.65 | 83.45 |
| CDX72551 | Canola | nucleus | 70.1 | 73.07 |
| CDY67210 | Canola | nucleus | 70.1 | 72.17 |
| CDY31481 | Canola | nucleus | 33.25 | 64.06 |
| KRH28901 | Soybean | nucleus | 60.77 | 58.66 |
| KRH76553 | Soybean | nucleus | 60.53 | 58.56 |
| PGSC0003DMT400093973 | Potato | nucleus | 44.02 | 55.76 |
| Solyc02g061650.1.1 | Tomato | nucleus | 46.65 | 55.56 |
| CDX85942 | Canola | nucleus | 53.59 | 54.9 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 28.23 | 54.38 |
| CDX68105 | Canola | nucleus | 50.72 | 53.67 |
| CDY33634 | Canola | nucleus | 51.67 | 52.94 |
| CDX96631 | Canola | nucleus | 51.91 | 52.93 |
| CDX88261 | Canola | nucleus | 54.07 | 52.56 |
| CDX87612 | Canola | nucleus | 54.07 | 52.44 |
| GSMUA_Achr11P... | Banana | nucleus | 50.72 | 51.96 |
| CDY29520 | Canola | nucleus | 50.96 | 51.95 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 51.44 | 51.19 |
| Os06t0726800-01 | Rice | nucleus | 50.72 | 50.6 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 49.28 | 50.37 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 48.56 | 50.12 |
| KXG20945 | Sorghum | nucleus | 50.72 | 50.0 |
| Os04t0563700-01 | Rice | mitochondrion | 50.24 | 50.0 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 50.48 | 49.76 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 33.01 | 49.64 |
| Zm00001d026129_P001 | Maize | nucleus | 50.0 | 49.06 |
| Zm00001d036360_P002 | Maize | nucleus | 49.52 | 48.82 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 49.04 | 48.81 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 49.04 | 48.69 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 48.56 | 48.45 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 48.56 | 48.45 |
| EES12664 | Sorghum | nucleus | 50.0 | 48.38 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 48.33 | 48.21 |
| Zm00001d002662_P010 | Maize | nucleus | 48.56 | 44.62 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 47.61 | 42.25 |
| CDY62475 | Canola | nucleus | 33.49 | 39.89 |
| CDY69551 | Canola | nucleus | 33.73 | 39.72 |
| CDY11354 | Canola | plastid | 39.0 | 37.64 |
| CDX80988 | Canola | plastid | 38.04 | 37.15 |
| CDY06752 | Canola | nucleus | 25.12 | 36.84 |
| CDX69311 | Canola | nucleus | 34.45 | 34.37 |
| CDX75659 | Canola | nucleus | 34.69 | 33.88 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 53.59 | 33.53 |
| CDY17037 | Canola | nucleus, plastid | 28.23 | 32.42 |
| CDY17091 | Canola | nucleus | 27.75 | 32.4 |
| CDY17039 | Canola | nucleus | 27.99 | 32.23 |
| CDY47596 | Canola | nucleus | 27.99 | 32.23 |
| CDY06757 | Canola | nucleus, plastid | 27.99 | 32.23 |
| CDY23653 | Canola | nucleus | 27.51 | 32.21 |
| CDX88368 | Canola | plastid | 28.95 | 31.84 |
| CDY47595 | Canola | nucleus, plastid | 28.23 | 31.81 |
| CDY66770 | Canola | nucleus | 27.51 | 31.77 |
| CDY22369 | Canola | nucleus | 26.08 | 31.05 |
| CDX87520 | Canola | nucleus | 28.47 | 30.83 |
| CDY41784 | Canola | plastid | 24.88 | 30.59 |
| CDY53304 | Canola | plastid | 29.19 | 29.83 |
| CDY48212 | Canola | nucleus | 26.79 | 29.71 |
| CDY61993 | Canola | nucleus | 26.55 | 29.44 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 14.83 | 29.38 |
| CDX85466 | Canola | plastid | 29.67 | 29.38 |
| CDY02719 | Canola | plastid | 29.67 | 28.9 |
| CDX97090 | Canola | nucleus | 29.67 | 28.44 |
| CDX69768 | Canola | nucleus, plastid | 29.43 | 28.15 |
| CDX81722 | Canola | nucleus, plastid | 27.03 | 28.04 |
| CDX96836 | Canola | nucleus, plastid | 28.95 | 27.5 |
| CDX87087 | Canola | plastid | 27.27 | 27.34 |
| CDY36574 | Canola | mitochondrion, nucleus | 28.47 | 27.29 |
| CDX92090 | Canola | mitochondrion, nucleus | 22.97 | 26.89 |
| CDX79389 | Canola | plastid | 27.75 | 26.79 |
| CDY66415 | Canola | nucleus | 27.75 | 26.73 |
| CDX67944 | Canola | plastid | 27.51 | 26.62 |
| CDY65994 | Canola | plastid | 27.75 | 26.19 |
| CDY25649 | Canola | plastid | 27.03 | 25.86 |
| CDY38664 | Canola | nucleus, plastid | 27.99 | 25.71 |
| CDY39984 | Canola | plastid | 27.03 | 25.22 |
| CDY37592 | Canola | mitochondrion, plastid | 27.27 | 24.95 |
| CDY14091 | Canola | plastid | 38.28 | 24.39 |
| CDX87305 | Canola | plastid | 26.55 | 24.03 |
| CDY33338 | Canola | nucleus | 31.82 | 22.77 |
| CDY04980 | Canola | nucleus | 38.04 | 22.14 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.34 | 21.51 |
| CDX96819 | Canola | nucleus | 33.01 | 21.4 |
| CDX83953 | Canola | nucleus | 33.01 | 21.07 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 27.27 | 11.53 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | GO:A0A078F7X5 | UniProt:A0A078F7X5 | EnsemblPlants:CDY07838 | ProteinID:CDY07838 |
| ProteinID:CDY07838.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00124986001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF336 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0004EDFB11 | SEG:seg | : | : | : |
Description
BnaC03g47840DBnaC03g47840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7X5]
Coordinates
chrLK031981:-:314413..316568
Molecular Weight (calculated)
47979.1 Da
IEP (calculated)
5.415
GRAVY (calculated)
-0.315
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNSCENNNI VVEPTKTTIL QDETRSRKVG QEMKRRVLGV INQNLVGARG YPCVVNKRGN LSKQEEGCQK KKPDPLRSSI TSRSRVEEPL CQQDEEKKKL
101: KPTVPSANEE EATLDQPVPM SLEKPYTEAD DPMEEVEMED VTVEEEPIMD IDVSDAKNSL AAVEYVQDLY AFHREMERFS CVPVDYMMQQ IDLNEKMRAI
201: LIDWLIEVHD KFDLMNETLF LTVNLIDRFL SKKAVLRKKL QLVGLVALLL ACKYEEVSVP LVEDLVLISD RAYTRTDVLH MEKTMLSTLQ FNVSLPTQYP
301: FLRRFLKAAQ ADKKCEVLAS FLMELALVEY EMLRFPPSLL AATAVYTAQC TLDGFRKWNT TCEFHSHYSE DQLMECCRKM VSLHQRAATG KMTGVYRKYS
401: TFKFGYIAKS EAAHFLVS
101: KPTVPSANEE EATLDQPVPM SLEKPYTEAD DPMEEVEMED VTVEEEPIMD IDVSDAKNSL AAVEYVQDLY AFHREMERFS CVPVDYMMQQ IDLNEKMRAI
201: LIDWLIEVHD KFDLMNETLF LTVNLIDRFL SKKAVLRKKL QLVGLVALLL ACKYEEVSVP LVEDLVLISD RAYTRTDVLH MEKTMLSTLQ FNVSLPTQYP
301: FLRRFLKAAQ ADKKCEVLAS FLMELALVEY EMLRFPPSLL AATAVYTAQC TLDGFRKWNT TCEFHSHYSE DQLMECCRKM VSLHQRAATG KMTGVYRKYS
401: TFKFGYIAKS EAAHFLVS
001: MVNSCENKIF VKPTSTTILQ DETRSRKFGQ EMKREKRRVL RVINQNLAGA RVYPCVVNKR GSLLSNKQEE EEGCQKKKFD SLRPSVTRSG VEEETNKKLK
101: PSVPSANDFG DCIFIDEEEA TLDLPMPMSL EKPYIEADPM EEVEMEDVTV EEPIVDIDVL DSKNSLAAVE YVQDLYAFYR TMERFSCVPV DYMMQQIDLN
201: EKMRAILIDW LIEVHDKFDL INETLFLTVN LIDRFLSKQN VMRKKLQLVG LVALLLACKY EEVSVPVVED LVLISDKAYT RNDVLEMEKT MLSTLQFNIS
301: LPTQYPFLKR FLKAAQADKK CEVLASFLIE LALVEYEMLR FPPSLLAATS VYTAQCTLDG SRKWNSTCEF HCHYSEDQLM ECSRKLVSLH QRAATGNLTG
401: VYRKYSTSKF GYIAKCEAAH FLVSESHHS
101: PSVPSANDFG DCIFIDEEEA TLDLPMPMSL EKPYIEADPM EEVEMEDVTV EEPIVDIDVL DSKNSLAAVE YVQDLYAFYR TMERFSCVPV DYMMQQIDLN
201: EKMRAILIDW LIEVHDKFDL INETLFLTVN LIDRFLSKQN VMRKKLQLVG LVALLLACKY EEVSVPVVED LVLISDKAYT RNDVLEMEKT MLSTLQFNIS
301: LPTQYPFLKR FLKAAQADKK CEVLASFLIE LALVEYEMLR FPPSLLAATS VYTAQCTLDG SRKWNSTCEF HCHYSEDQLM ECSRKLVSLH QRAATGNLTG
401: VYRKYSTSKF GYIAKCEAAH FLVSESHHS
Arabidopsis Description
CYCB2-1Cyclin-B2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q39068]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.