Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96631 | Canola | nucleus | 96.57 | 96.1 |
| CDY31481 | Canola | nucleus | 47.55 | 89.4 |
| CDY29520 | Canola | nucleus | 82.35 | 81.95 |
| AT1G20610.1 | Thale cress | nucleus | 83.82 | 79.72 |
| CDX85942 | Canola | nucleus | 71.81 | 71.81 |
| CDX68105 | Canola | nucleus | 68.87 | 71.14 |
| CDX87612 | Canola | nucleus | 75.0 | 71.0 |
| CDX88261 | Canola | nucleus | 74.75 | 70.93 |
| PGSC0003DMT400075380 | Potato | nucleus | 39.95 | 68.78 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 42.65 | 65.66 |
| Solyc04g082430.2.1 | Tomato | nucleus | 59.31 | 61.58 |
| VIT_18s0001g14170.t01 | Wine grape | nucleus | 66.42 | 61.45 |
| PGSC0003DMT400025854 | Potato | nucleus | 64.22 | 59.41 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 31.37 | 58.99 |
| KRH60628 | Soybean | nucleus | 56.37 | 56.79 |
| Solyc12g094600.1.1 | Tomato | nucleus | 58.82 | 56.47 |
| Zm00001d036360_P002 | Maize | nucleus | 58.58 | 56.37 |
| Os06t0726800-01 | Rice | nucleus | 57.84 | 56.32 |
| KRH51329 | Soybean | nucleus, plastid | 56.62 | 55.66 |
| KXG20945 | Sorghum | nucleus | 57.84 | 55.66 |
| GSMUA_Achr11P... | Banana | nucleus | 54.9 | 54.9 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 55.15 | 53.7 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 55.15 | 53.7 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 55.15 | 53.57 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 55.64 | 53.54 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 54.9 | 53.46 |
| CDX72551 | Canola | nucleus | 52.21 | 53.12 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 54.66 | 53.1 |
| CDY26816 | Canola | nucleus | 52.45 | 52.58 |
| CDY30357 | Canola | nucleus | 52.7 | 52.57 |
| CDY67210 | Canola | nucleus | 52.21 | 52.46 |
| CDY29184 | Canola | nucleus | 53.43 | 52.03 |
| CDY07838 | Canola | nucleus | 52.94 | 51.67 |
| Os04t0563700-01 | Rice | mitochondrion | 52.21 | 50.71 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 49.75 | 50.12 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 49.75 | 49.63 |
| Zm00001d026129_P001 | Maize | nucleus | 51.72 | 49.53 |
| EES12664 | Sorghum | nucleus | 51.96 | 49.07 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 33.33 | 48.92 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 49.75 | 48.22 |
| Zm00001d002662_P010 | Maize | nucleus | 51.96 | 46.59 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 49.75 | 43.1 |
| CDY62475 | Canola | nucleus | 31.37 | 36.47 |
| CDY69551 | Canola | nucleus | 31.37 | 36.06 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 56.13 | 34.28 |
| CDY06752 | Canola | nucleus | 23.77 | 34.04 |
| CDX80988 | Canola | plastid | 35.54 | 33.88 |
| CDY11354 | Canola | plastid | 35.78 | 33.72 |
| CDY06757 | Canola | nucleus, plastid | 27.94 | 31.41 |
| CDX69311 | Canola | nucleus | 31.86 | 31.03 |
| CDY61993 | Canola | nucleus | 28.43 | 30.77 |
| CDY66770 | Canola | nucleus | 27.21 | 30.66 |
| CDX75659 | Canola | nucleus | 32.11 | 30.61 |
| CDY47596 | Canola | nucleus | 26.96 | 30.3 |
| CDY17039 | Canola | nucleus | 26.96 | 30.3 |
| CDY23653 | Canola | nucleus | 26.23 | 29.97 |
| CDY22369 | Canola | nucleus | 25.74 | 29.91 |
| CDY17091 | Canola | nucleus | 26.23 | 29.89 |
| CDY48212 | Canola | nucleus | 27.45 | 29.71 |
| CDX88368 | Canola | plastid | 27.45 | 29.47 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 15.2 | 29.38 |
| CDX85466 | Canola | plastid | 30.15 | 29.15 |
| CDY17037 | Canola | nucleus, plastid | 25.74 | 28.85 |
| CDY41784 | Canola | plastid | 24.02 | 28.82 |
| CDX87520 | Canola | nucleus | 27.21 | 28.76 |
| CDX81722 | Canola | nucleus, plastid | 28.19 | 28.54 |
| CDY53304 | Canola | plastid | 28.43 | 28.36 |
| CDY47595 | Canola | nucleus, plastid | 25.74 | 28.3 |
| CDY02719 | Canola | plastid | 29.66 | 28.21 |
| CDY65994 | Canola | plastid | 29.9 | 27.54 |
| CDX97090 | Canola | nucleus | 29.17 | 27.29 |
| CDX96836 | Canola | nucleus, plastid | 29.41 | 27.27 |
| CDX87087 | Canola | plastid | 27.7 | 27.1 |
| CDY66415 | Canola | nucleus | 28.68 | 26.96 |
| CDX67944 | Canola | plastid | 28.43 | 26.85 |
| CDX79389 | Canola | plastid | 28.43 | 26.79 |
| CDX69768 | Canola | nucleus, plastid | 28.68 | 26.77 |
| CDY25649 | Canola | plastid | 28.68 | 26.77 |
| CDX92090 | Canola | mitochondrion, nucleus | 23.28 | 26.61 |
| CDY36574 | Canola | mitochondrion, nucleus | 28.43 | 26.61 |
| CDY37592 | Canola | mitochondrion, plastid | 29.41 | 26.26 |
| CDY38664 | Canola | nucleus, plastid | 29.17 | 26.15 |
| CDY39984 | Canola | plastid | 28.19 | 25.67 |
| CDX87305 | Canola | plastid | 28.68 | 25.32 |
| CDY33338 | Canola | nucleus | 34.56 | 24.14 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 35.54 | 23.81 |
| CDY14091 | Canola | plastid | 35.54 | 22.1 |
| CDX96819 | Canola | nucleus | 34.8 | 22.02 |
| CDX83953 | Canola | nucleus | 34.56 | 21.53 |
| CDY04980 | Canola | nucleus | 35.54 | 20.2 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 27.45 | 11.32 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | GO:A0A078H827 | UniProt:A0A078H827 | EnsemblPlants:CDY33634 | ProteinID:CDY33634 |
| ProteinID:CDY33634.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00054979001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF350 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0004EEBDEA | SEG:seg | : | : | : |
Description
BnaC08g19340DBnaC08g19340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H827]
Coordinates
chrLK032319:-:90442..92870
Molecular Weight (calculated)
46437.8 Da
IEP (calculated)
5.082
GRAVY (calculated)
-0.354
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSDENSVG LIGSTNLQGG GGKIMAAAKP GPTRRALSAI NKNINEPPSY PYAVNNKRSL SERNAICNKP PPHRPVTRKF AAQLAGNKTQ IKEEETKKPD
101: SVPSEAAEDF NEPMFVQHTQ AMMEEIEMED ADEDEEERVI NIDACDEKNP LAVIEYINDI YDFFKKSEEL SCVPPNYMDN QQDLNERMRG ILIDWLIEVH
201: YKFELMEETL YLTVSVIDRF LAVHQIVRKK LQLVGVTALL LACKYEEVSV PVVDDLILIS DKAYTRREVL DMEKLMANTL QFNFSLPTPY VFMRRFLKAA
301: QSDKKLEVLS FFIIELCLVE YEMLEYTPSK LAASAIYTAR CTFIGFEEWS KTCEFHTGYK EEELLECARK MVGFHQKAGT GKLTGVHRKY NTSKLSYAAR
401: TEPAGFLL
101: SVPSEAAEDF NEPMFVQHTQ AMMEEIEMED ADEDEEERVI NIDACDEKNP LAVIEYINDI YDFFKKSEEL SCVPPNYMDN QQDLNERMRG ILIDWLIEVH
201: YKFELMEETL YLTVSVIDRF LAVHQIVRKK LQLVGVTALL LACKYEEVSV PVVDDLILIS DKAYTRREVL DMEKLMANTL QFNFSLPTPY VFMRRFLKAA
301: QSDKKLEVLS FFIIELCLVE YEMLEYTPSK LAASAIYTAR CTFIGFEEWS KTCEFHTGYK EEELLECARK MVGFHQKAGT GKLTGVHRKY NTSKLSYAAR
401: TEPAGFLL
001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
Arabidopsis Description
CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.