Factsheet for Solyc12g094600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008370.2.1
Solyc01g009620.2.1
Solyc01g009630.2.1
Solyc02g068100.2.1
Solyc03g025880.2.1
Solyc03g118200.2.1
Solyc04g071160.2.1
Solyc06g060490.2.1
Solyc06g068840.2.1
Solyc07g008340.2.1
Solyc07g025200.1.1
Solyc07g025210.1.1
Solyc07g025230.1.1
Solyc08g075360.1.1
Solyc09g083420.2.1
Solyc11g040340.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20590.1	Solyc07g008340.2.1	AT4G19210.1	20706207
AT1G20590.1	Solyc08g075360.1.1	AT4G19210.1	20706207
AT1G20590.1	Solyc01g009620.2.1	AT4G25550.1	20706207
AT1G20590.1	Solyc01g009630.2.1	AT4G25550.1	20706207
AT1G20590.1	Solyc03g025880.2.1	AT4G25550.1	20706207
AT1G20610.1	Solyc07g025200.1.1	AT1G19520.1	20706207
AT1G20610.1	Solyc07g025210.1.1	AT1G19520.1	20706207
AT1G20610.1	Solyc07g025230.1.1	AT1G19520.1	20706207
AT1G20610.1	Solyc04g071160.2.1	AT1G43700.1	20706207
AT1G20610.1	Solyc06g060490.2.1	AT1G43700.1	20706207
AT1G20610.1	Solyc09g083420.2.1	AT1G56290.1	20706207
AT1G20610.1	Solyc11g040340.1.1	AT1G71380.1	20706207
AT1G20610.1	Solyc01g008370.2.1	AT3G11270.1	20706207
AT1G20610.1	Solyc03g118200.2.1	AT5G07300.1	20706207
AT1G20610.1	Solyc06g068840.2.1	AT5G07300.1	20706207
AT1G20610.1	Solyc02g068100.2.1	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075380	Potato	nucleus	53.41	95.78
Solyc04g082430.2.1	Tomato	nucleus	66.82	72.26
CDY31481	Canola	nucleus	35.06	68.66
VIT_18s0001g14170.t01	Wine grape	nucleus	65.41	63.04
Bra003727.1-P	Field mustard	nucleus	54.59	60.57
GSMUA_Achr5P19270_001	Banana	cytosol	30.82	60.37
CDX85942	Canola	nucleus	57.18	59.56
AT1G20610.1	Thale cress	nucleus	60.0	59.44
CDY33634	Canola	nucleus	56.47	58.82
CDX68105	Canola	nucleus	54.59	58.73
CDX96631	Canola	nucleus	56.47	58.54
Bra016460.1-P	Field mustard	nucleus	56.47	58.54
Bra015762.1-P	Field mustard	nucleus	59.06	58.24
CDX87612	Canola	nucleus	58.82	58.0
CDX88261	Canola	nucleus	58.59	57.91
KRH60628	Soybean	nucleus	53.88	56.54
Solyc03g032190.2.1	Tomato	nucleus	57.18	56.38
GSMUA_Achr11P...	Banana	nucleus	54.12	56.37
CDY29520	Canola	nucleus	54.12	56.1
Bra025831.1-P	Field mustard	nucleus	53.88	55.85
KRH51329	Soybean	nucleus, plastid	54.12	55.42
AT1G76310.3	Thale cress	nucleus	59.53	55.12
GSMUA_Achr8P13320_001	Banana	nucleus	53.65	54.29
Os06t0726800-01	Rice	nucleus	53.18	53.94
Solyc02g082820.2.1	Tomato	nucleus	54.59	53.46
GSMUA_Achr5P19110_001	Banana	nucleus	52.94	53.07
AT1G20590.1	Thale cress	cytosol, golgi, nucleus, plastid	32.94	52.83
KXG20945	Sorghum	nucleus	52.71	52.83
Zm00001d036360_P002	Maize	nucleus	51.76	51.89
TraesCS2A01G404800.1	Wheat	nucleus	49.18	51.6
TraesCS2B01G422800.1	Wheat	nucleus	49.41	51.34
HORVU7Hr1G121820.6	Barley	nucleus	50.59	51.19
TraesCS2D01G401700.1	Wheat	nucleus, plastid	50.59	51.07
TraesCS7A01G549500.1	Wheat	nucleus	50.12	50.84
Solyc02g061650.1.1	Tomato	nucleus	41.88	50.71
TraesCS7D01G536000.1	Wheat	nucleus	49.88	50.6
TraesCS7B01G472800.1	Wheat	nucleus	49.88	50.6
HORVU0Hr1G022770.1	Barley	nucleus, plastid	32.71	50.0
Zm00001d026129_P001	Maize	nucleus	49.88	49.77
Os04t0563700-01	Rice	mitochondrion	49.18	49.76
EES12664	Sorghum	nucleus	50.12	49.31
Zm00001d002662_P010	Maize	nucleus	49.88	46.59
HORVU2Hr1G096070.2	Barley	nucleus	49.41	44.59
Solyc01g009040.2.1	Tomato	nucleus	36.24	35.4
Solyc10g078330.1.1	Tomato	nucleus	34.59	34.75
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	54.12	34.43
Solyc10g080950.1.1	Tomato	nucleus	36.94	33.98
Solyc06g073610.2.1	Tomato	nucleus	34.35	33.18
Solyc04g078310.2.1	Tomato	nucleus	25.88	29.65
Solyc12g088520.1.1	Tomato	nucleus	24.0	28.73
Solyc12g088470.1.1	Tomato	nucleus	24.24	28.61
Solyc12g088530.1.1	Tomato	nucleus	23.76	28.53
Solyc12g088500.1.1	Tomato	nucleus	23.53	28.25
Solyc10g049360.1.1	Tomato	nucleus	24.71	27.78
Solyc03g120440.1.1	Tomato	nucleus, plastid	28.0	25.98
Solyc11g005090.1.1	Tomato	plastid	29.65	25.71
Solyc06g065680.2.1	Tomato	nucleus, plastid	27.53	24.63
Solyc07g066660.2.1	Tomato	nucleus	33.88	19.49

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	ncoils:Coil	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:K4DH32
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF350
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc12g094600.1	EnsemblPlants:Solyc12g094600.1.1	UniParc:UPI000276989B
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:64774198..64777044

Molecular Weight (calculated)

48532.0 Da

IEP (calculated)

5.407

GRAVY (calculated)

-0.160

Length

425 amino acids

Sequence
(BLAST)

001: MVGSNENSQG VVRPSILRGV MGNNRRALST INGNIVEAPQ YPCKLRKKNG VTDKYVDGEM NPIHRLVTRK YAAQVADKRQ QPSLEVTKPV VETAPNGNEL
101: EGAINTDVED YKATSDYVVP MSVQHTEAMM EEIDRMDEEI EMEEIEKALI VDIDRADKKN VLAAVEYIDD IHAYYKKIES SACAPPNYME QQFDINERMR
201: AILIDWLIEV HYKFELMEET LYLTVNLIDR FLAVQPVVRK ELQLVGVTAL FLACKYEEVS VPVVQDLILI SDKAYTGMEV LEMEKLMINT LQFKLSVPTP
301: YMFMKRFLKA AQSDKKVELL SFFMTELCLV EYETLRFPPS MLAAAAIFTA QCTLGVAKEW TKTCEKYSKY TRDQLLECSK LMVTFHQKAA TGRLNAVHRK
401: YSISKYGFVA KMFPPASFLL EASFF

Best Arabidopsis Sequence Match ( AT1G76310.1 )
(BLAST)

001: MGGSDENRHG VIGPMNRQQG GLRGGKVIPT NGQTRRALSN INKNIIGAPV YPCAVKRPFT EKNGICNKKI PPVPVHRPVT RKFAAQLAEN NLQIHKEETK
101: KPDLISNEAL DRIITDVEEG DFNEPMFVQH TEAMLEEIDK MEGIEMQDSN DIDAEVEESV MDIDSCDKNN PLSVVEYIND IYCFYKKNEC RSCVPPNYME
201: NQHDINERMR GILFDWLIEV HYKFELMEET LYLTINLIDR FLAVHQHIAR KKLQLVGVTA MLLACKYEEV SVPVVDDLIL ISDKAYTRTE ILDMEKLMAN
301: TLQFNFCLPT PYVFMRRFLK AAQSDKKLEL LSFFMIELCL VEYEMLQYTP SQLAASAIYT AQSTLKGYED WSKTSEFHSG YTEEALLECS RKMVGLHHKA
401: GTGKLTGVHR KYNTSKFGYA ARIEPAGFLL L

Arabidopsis Description

CYCB2;4CYCLIN B2;4 [Source:TAIR;Acc:AT1G76310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.