Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039096 | Potato | nucleus | 96.64 | 96.64 |
| VIT_05s0020g04950.t01 | Wine grape | nucleus | 56.72 | 54.2 |
| CDY41723 | Canola | nucleus | 44.44 | 51.19 |
| Bra027946.1-P | Field mustard | nucleus | 44.32 | 51.12 |
| CDY53572 | Canola | nucleus | 44.06 | 50.97 |
| AT1G56290.1 | Thale cress | nucleus | 45.22 | 50.58 |
| KRG90984 | Soybean | nucleus | 50.9 | 50.26 |
| KRH35769 | Soybean | nucleus | 50.9 | 50.13 |
| EER93483 | Sorghum | nucleus | 43.41 | 43.98 |
| Zm00001d033954_P001 | Maize | nucleus | 43.28 | 43.91 |
| Os03t0740700-01 | Rice | nucleus | 42.38 | 43.21 |
| GSMUA_Achr3P29250_001 | Banana | nucleus | 44.83 | 43.0 |
| TraesCS5B01G384000.1 | Wheat | nucleus | 42.89 | 42.19 |
| TraesCS5A01G380400.2 | Wheat | nucleus | 42.51 | 41.59 |
| TraesCS5D01G390200.1 | Wheat | nucleus | 43.02 | 41.52 |
| HORVU5Hr1G094010.1 | Barley | plastid | 42.51 | 37.56 |
| Solyc12g008870.1.1 | Tomato | nucleus | 7.75 | 17.49 |
| Solyc05g032650.1.1 | Tomato | extracellular, golgi | 5.17 | 14.34 |
| Solyc12g008890.1.1 | Tomato | nucleus | 2.33 | 14.29 |
Protein Annotations
| EnsemblPlants:Solyc09g083420.2.1 | EnsemblPlantsGene:Solyc09g083420.2 | InterPro:Cwf19-like_C_dom-1 | InterPro:Cwf19-like_C_dom-2 | ncoils:Coil | PANTHER:PTHR12072 |
| PANTHER:PTHR12072:SF5 | PFAM:PF04676 | PFAM:PF04677 | SEG:seg | UniParc:UPI000276C740 | UniProt:K4CVW8 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:69076443..69082462
Molecular Weight (calculated)
88033.3 Da
IEP (calculated)
9.999
GRAVY (calculated)
-1.072
Length
774 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSGLKIIPR EHVEKAKDES LDDSRKQRRR SGHKKDRERK KKKKSRSTSS DDEDLDKIRA RSKKKKWYAS DEDLSSYSDG SESDSASDYE RKNSSRKTSK
101: KRRSKHGKSK ERSQSSSSES ESEKRKRSKK DRQSRREGDV LQNNVLDNDF DGSKLRNDHQ RVRKEMGLDW MLRPKDNADK IPESVSNCSA KETPAEEVTK
201: VNPKELNPYL KDGGGGYPDD SEGTKSGGSQ LLSSAVVGDG GASWRLKALR RAQEQADREG RKLDEVAAER WGSLSQLAVS VSSGKAAPTR AHLHAIKRRQ
301: GAMDDKEAVT DKRNQAYARK ETSPGRSKMR MPTNLKDSLS WRKERNQNIS NADAGLIATA ISSVNKFSND GNFMREFMHE KSGDSSHAPD SSNPKSGVLE
401: SKPDLPVYER TSEDATNIKP ALSANQLAAK VMQLRMKGMH DEAEKLLKEA EELKTKQTAN DVLSRPRIDG STSRYVMHDL SARQKNKAED ADVHLAQKIV
501: QNKKYTTYGQ ADDEYDYDDG PRKKSRKKGG VENHKSLETA NHARRILTQQ ERCQFCFENP TRPKHLVVAI ANFSYLSLPV WRSIAPGHCC ILTMQHESAT
601: RSLDDNVWEE FRNFKKCLIM MFAKQEKDLI FLETVMSLAR QKRHCLVECI PLPKEVAKQA PLYFKKAIDE AEDEWSQHNA KKLIDTSVKG LRASIPKDFP
701: YFHVEFGLNK GFVHVIDDEN QFSSSFGLNV VRGMLKLPPE DMHQHRRRES VDTQREAVAG FARDWDPFDW TKQL
101: KRRSKHGKSK ERSQSSSSES ESEKRKRSKK DRQSRREGDV LQNNVLDNDF DGSKLRNDHQ RVRKEMGLDW MLRPKDNADK IPESVSNCSA KETPAEEVTK
201: VNPKELNPYL KDGGGGYPDD SEGTKSGGSQ LLSSAVVGDG GASWRLKALR RAQEQADREG RKLDEVAAER WGSLSQLAVS VSSGKAAPTR AHLHAIKRRQ
301: GAMDDKEAVT DKRNQAYARK ETSPGRSKMR MPTNLKDSLS WRKERNQNIS NADAGLIATA ISSVNKFSND GNFMREFMHE KSGDSSHAPD SSNPKSGVLE
401: SKPDLPVYER TSEDATNIKP ALSANQLAAK VMQLRMKGMH DEAEKLLKEA EELKTKQTAN DVLSRPRIDG STSRYVMHDL SARQKNKAED ADVHLAQKIV
501: QNKKYTTYGQ ADDEYDYDDG PRKKSRKKGG VENHKSLETA NHARRILTQQ ERCQFCFENP TRPKHLVVAI ANFSYLSLPV WRSIAPGHCC ILTMQHESAT
601: RSLDDNVWEE FRNFKKCLIM MFAKQEKDLI FLETVMSLAR QKRHCLVECI PLPKEVAKQA PLYFKKAIDE AEDEWSQHNA KKLIDTSVKG LRASIPKDFP
701: YFHVEFGLNK GFVHVIDDEN QFSSSFGLNV VRGMLKLPPE DMHQHRRRES VDTQREAVAG FARDWDPFDW TKQL
001: MFSGIKIIPR DEVHDDSWEG EREKSKGGKD RRRKNKDVNR KERRGEGSKR DGKKIAKSGD GETVDDDLLE GDIVRKKMGL DWMLPPTRKA DPNPASDVED
101: KFEESAPEVT KVNPRELNPY LKENGTGYPE EESEKKHGKD QLLPSSVVGD GGASWRMKAL KRAKEQAARE GLRLEEVAGE RYGSLGNLVE SVASQRAAPS
201: RAHLNAINNR RRGENEKNDS EKKPKERISE KGNNREYLKG ESLNHRVLRA PKTDPSLSWG KRKSQTHRNE DSKLISEAAA HMNKFSNDGN FMKEMLSKQK
301: NVSVSPVETR GDHRSDVEQE ALPSETNKDD EGTLPSMENL SVNKLAAKAL QLRMKGKHEE AQKIMEEAER LKAKQAVGDD SSKDHHSIRT AVRYPVKDMS
401: GRRKNEDDTD MHLAKSIMQN KQYKTSNQAA DDEYEYGDAP SKKSRKRESS SNIPEKDNRV KRIMTQQERC LFCFENPKRP KHLVVSIANF TYLMLPQHQP
501: LVQGHCCILP MQHEAASRSV DDNVWDEIRN FKKCLIMMYA KEGKDAVFLE TVIGLSQQRR HCLIECIPIP QEIAKEGPLY FKKAIDEAES EWSQHNAKKL
601: IDTSVKGLRN SIPKNFPYFH VEFGLDKGFV HVIDDEQQFN SNLGLNVIRG MLELPEEDMY RRRRQESVES QKKAVATFAR EWEHFDWTKQ LD
101: KFEESAPEVT KVNPRELNPY LKENGTGYPE EESEKKHGKD QLLPSSVVGD GGASWRMKAL KRAKEQAARE GLRLEEVAGE RYGSLGNLVE SVASQRAAPS
201: RAHLNAINNR RRGENEKNDS EKKPKERISE KGNNREYLKG ESLNHRVLRA PKTDPSLSWG KRKSQTHRNE DSKLISEAAA HMNKFSNDGN FMKEMLSKQK
301: NVSVSPVETR GDHRSDVEQE ALPSETNKDD EGTLPSMENL SVNKLAAKAL QLRMKGKHEE AQKIMEEAER LKAKQAVGDD SSKDHHSIRT AVRYPVKDMS
401: GRRKNEDDTD MHLAKSIMQN KQYKTSNQAA DDEYEYGDAP SKKSRKRESS SNIPEKDNRV KRIMTQQERC LFCFENPKRP KHLVVSIANF TYLMLPQHQP
501: LVQGHCCILP MQHEAASRSV DDNVWDEIRN FKKCLIMMYA KEGKDAVFLE TVIGLSQQRR HCLIECIPIP QEIAKEGPLY FKKAIDEAES EWSQHNAKKL
601: IDTSVKGLRN SIPKNFPYFH VEFGLDKGFV HVIDDEQQFN SNLGLNVIRG MLELPEEDMY RRRRQESVES QKKAVATFAR EWEHFDWTKQ LD
Arabidopsis Description
CwfJ-like family protein [Source:UniProtKB/TrEMBL;Acc:Q93ZX4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.