Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g083420.2.1 | Tomato | nucleus | 96.64 | 96.64 |
| VIT_05s0020g04950.t01 | Wine grape | nucleus | 56.85 | 54.32 |
| CDY41723 | Canola | nucleus | 44.57 | 51.34 |
| CDY53572 | Canola | nucleus | 44.32 | 51.27 |
| Bra027946.1-P | Field mustard | nucleus | 44.44 | 51.27 |
| KRH35769 | Soybean | nucleus | 51.68 | 50.89 |
| KRG90984 | Soybean | nucleus | 51.42 | 50.77 |
| AT1G56290.1 | Thale cress | nucleus | 45.09 | 50.43 |
| EER93483 | Sorghum | nucleus | 43.54 | 44.11 |
| Zm00001d033954_P001 | Maize | nucleus | 43.41 | 44.04 |
| Os03t0740700-01 | Rice | nucleus | 42.51 | 43.35 |
| GSMUA_Achr3P29250_001 | Banana | nucleus | 45.09 | 43.25 |
| TraesCS5B01G384000.1 | Wheat | nucleus | 42.89 | 42.19 |
| TraesCS5A01G380400.2 | Wheat | nucleus | 42.64 | 41.72 |
| TraesCS5D01G390200.1 | Wheat | nucleus | 43.02 | 41.52 |
| HORVU5Hr1G094010.1 | Barley | plastid | 42.38 | 37.44 |
| PGSC0003DMT400000758 | Potato | cytosol, extracellular, mitochondrion, nucleus | 10.98 | 14.26 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400039096 | EnsemblPlantsGene:PGSC0003DMG400015117 | InterPro:Cwf19-like_C_dom-1 | InterPro:Cwf19-like_C_dom-2 | ncoils:Coil | PANTHER:PTHR12072 |
| PANTHER:PTHR12072:SF5 | PFAM:PF04676 | PFAM:PF04677 | PGSC:PGSC0003DMG400015117 | SEG:seg | UniParc:UPI000294E345 |
| UniProt:M1B7S6 | MapMan:35.2 | : | : | : | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015117]
Coordinates
chr9:+:55566611..55573561
Molecular Weight (calculated)
88219.7 Da
IEP (calculated)
9.932
GRAVY (calculated)
-1.079
Length
774 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSGLKIIPR EHIEKVKDES LDDSRKQRRR SGHKKDRERK KKKKSRSTSS DDEDLDKIRA RSKKKKWYAS DEDLSSYSDG SESDSASDYE RKNSSRKTSK
101: KRRSKHGKSK ERSQSSSSES ESEKRKRSKK DRQSRREGDV LQNNLLDNDL DGSKLRNDHE LMRKEMGLDW MLRPKDNVDK IPESVSNCSA KETPAEEVTK
201: VNPKELNPYL KDGGGGYPDD SEGTKNGGSQ LLSSAVVGDG GASWRLKALR RAQEQADREG RKLNEVAAER WGSLSQLAVS VSSGKAAPTR AHLHAIKRRQ
301: GAMDDKEAVT DKRNQTCARK ETSPGRSKMR MPTNLKDSLS WRKEKNQNIS NADAGLIATA ISSVNKFSND GNFMREFMHE KSGDSSHAPD SSNPKSGILE
401: SKPDLPVYER TSEDATNIKP ALTANQLAAK VMQLRMKGMH DEAEKLLKEA EEMKTKQTAN DVLSRPRIDG STNRYVMHDL SSRQKNKAED ADVHLAQKIV
501: QNKKYTTYGQ ADDEYDYDDG PRKKSRKKGG VENHKSLETA NHARRILTQQ ERCQFCFENP TRPKHLVVAI ANFSYLSLPV WRSISPGHCC ILTMQHESAT
601: RSLDDNVWEE FRNFKKCLIM MFAKQEKDLI FLETVMSLAR QKRHCLVECI PLPKEVAKQA PLYFKKAIDE AEDEWSQHNA KKLIDTSVKG LRASIPKDFP
701: YFHVEFGLNK GYVHVIDDEN QFSSSFGLNV VRGMLKLPPE DMHQHRRRES VDTQREAVAN FARDWDPFDW TKQL
101: KRRSKHGKSK ERSQSSSSES ESEKRKRSKK DRQSRREGDV LQNNLLDNDL DGSKLRNDHE LMRKEMGLDW MLRPKDNVDK IPESVSNCSA KETPAEEVTK
201: VNPKELNPYL KDGGGGYPDD SEGTKNGGSQ LLSSAVVGDG GASWRLKALR RAQEQADREG RKLNEVAAER WGSLSQLAVS VSSGKAAPTR AHLHAIKRRQ
301: GAMDDKEAVT DKRNQTCARK ETSPGRSKMR MPTNLKDSLS WRKEKNQNIS NADAGLIATA ISSVNKFSND GNFMREFMHE KSGDSSHAPD SSNPKSGILE
401: SKPDLPVYER TSEDATNIKP ALTANQLAAK VMQLRMKGMH DEAEKLLKEA EEMKTKQTAN DVLSRPRIDG STNRYVMHDL SSRQKNKAED ADVHLAQKIV
501: QNKKYTTYGQ ADDEYDYDDG PRKKSRKKGG VENHKSLETA NHARRILTQQ ERCQFCFENP TRPKHLVVAI ANFSYLSLPV WRSISPGHCC ILTMQHESAT
601: RSLDDNVWEE FRNFKKCLIM MFAKQEKDLI FLETVMSLAR QKRHCLVECI PLPKEVAKQA PLYFKKAIDE AEDEWSQHNA KKLIDTSVKG LRASIPKDFP
701: YFHVEFGLNK GYVHVIDDEN QFSSSFGLNV VRGMLKLPPE DMHQHRRRES VDTQREAVAN FARDWDPFDW TKQL
001: MFSGIKIIPR DEVHDDSWEG EREKSKGGKD RRRKNKDVNR KERRGEGSKR DGKKIAKSGD GETVDDDLLE GDIVRKKMGL DWMLPPTRKA DPNPASDVED
101: KFEESAPEVT KVNPRELNPY LKENGTGYPE EESEKKHGKD QLLPSSVVGD GGASWRMKAL KRAKEQAARE GLRLEEVAGE RYGSLGNLVE SVASQRAAPS
201: RAHLNAINNR RRGENEKNDS EKKPKERISE KGNNREYLKG ESLNHRVLRA PKTDPSLSWG KRKSQTHRNE DSKLISEAAA HMNKFSNDGN FMKEMLSKQK
301: NVSVSPVETR GDHRSDVEQE ALPSETNKDD EGTLPSMENL SVNKLAAKAL QLRMKGKHEE AQKIMEEAER LKAKQAVGDD SSKDHHSIRT AVRYPVKDMS
401: GRRKNEDDTD MHLAKSIMQN KQYKTSNQAA DDEYEYGDAP SKKSRKRESS SNIPEKDNRV KRIMTQQERC LFCFENPKRP KHLVVSIANF TYLMLPQHQP
501: LVQGHCCILP MQHEAASRSV DDNVWDEIRN FKKCLIMMYA KEGKDAVFLE TVIGLSQQRR HCLIECIPIP QEIAKEGPLY FKKAIDEAES EWSQHNAKKL
601: IDTSVKGLRN SIPKNFPYFH VEFGLDKGFV HVIDDEQQFN SNLGLNVIRG MLELPEEDMY RRRRQESVES QKKAVATFAR EWEHFDWTKQ LD
101: KFEESAPEVT KVNPRELNPY LKENGTGYPE EESEKKHGKD QLLPSSVVGD GGASWRMKAL KRAKEQAARE GLRLEEVAGE RYGSLGNLVE SVASQRAAPS
201: RAHLNAINNR RRGENEKNDS EKKPKERISE KGNNREYLKG ESLNHRVLRA PKTDPSLSWG KRKSQTHRNE DSKLISEAAA HMNKFSNDGN FMKEMLSKQK
301: NVSVSPVETR GDHRSDVEQE ALPSETNKDD EGTLPSMENL SVNKLAAKAL QLRMKGKHEE AQKIMEEAER LKAKQAVGDD SSKDHHSIRT AVRYPVKDMS
401: GRRKNEDDTD MHLAKSIMQN KQYKTSNQAA DDEYEYGDAP SKKSRKRESS SNIPEKDNRV KRIMTQQERC LFCFENPKRP KHLVVSIANF TYLMLPQHQP
501: LVQGHCCILP MQHEAASRSV DDNVWDEIRN FKKCLIMMYA KEGKDAVFLE TVIGLSQQRR HCLIECIPIP QEIAKEGPLY FKKAIDEAES EWSQHNAKKL
601: IDTSVKGLRN SIPKNFPYFH VEFGLDKGFV HVIDDEQQFN SNLGLNVIRG MLELPEEDMY RRRRQESVES QKKAVATFAR EWEHFDWTKQ LD
Arabidopsis Description
CwfJ-like family protein [Source:UniProtKB/TrEMBL;Acc:Q93ZX4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.