Factsheet for PGSC0003DMT400000758

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 2
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane, plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008870.1.1	Tomato	nucleus	54.87	95.34
Solyc12g008890.1.1	Tomato	nucleus	18.96	89.68
VIT_11s0016g02130.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	69.63	69.98
KRH19176	Soybean	mitochondrion	68.79	68.22
KRH02709	Soybean	nucleus	59.4	65.56
Solyc05g032650.1.1	Tomato	extracellular, golgi	30.54	65.23
AT5G56900.2	Thale cress	mitochondrion	62.42	62.42
CDY32895	Canola	mitochondrion	61.58	61.68
GSMUA_Achr8P05530_001	Banana	cytosol, extracellular, mitochondrion, nucleus	62.42	61.59
CDY32752	Canola	mitochondrion	60.07	61.51
Bra002785.1-P	Field mustard	mitochondrion, plastid	60.4	59.6
Zm00001d020242_P002	Maize	plastid	56.88	58.75
KXG35490	Sorghum	plastid	59.73	58.65
CDY33859	Canola	cytosol	11.58	58.47
TraesCS5A01G192000.1	Wheat	plastid	59.06	57.89
Os09t0364000-01	Rice	plastid	59.4	57.75
TraesCS5D01G198900.1	Wheat	plastid	58.89	57.73
TraesCS5B01G191100.1	Wheat	plastid	58.56	57.4
HORVU5Hr1G057610.14	Barley	plastid	59.56	54.95
PGSC0003DMT400039096	Potato	nucleus	14.26	10.98

Protein Annotations

EntrezGene:102588813	MapMan:15.5.16	Gene3D:3.30.428.10	Gene3D:4.10.1000.10	InterPro:Cwf19-like_C_dom-1	InterPro:Cwf19-like_C_dom-2
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0046872	InterPro:HIT-like_sf	InterPro:IPR000571	InterPro:IPR036265	UniProt:M0ZH94
PFAM:PF04676	PFAM:PF04677	EnsemblPlantsGene:PGSC0003DMG400000278	PGSC:PGSC0003DMG400000278	EnsemblPlants:PGSC0003DMT400000758	PFscan:PS50103
PANTHER:PTHR12072	PANTHER:PTHR12072:SF4	SMART:SM00356	SUPFAM:SSF54197	SUPFAM:SSF90229	UniParc:UPI000294BFDF
RefSeq:XP_006353535.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

CwfJ-like family protein / zinc finger (CCCH-type) family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000278]

Coordinates

chr12:+:3664888..3673904

Molecular Weight (calculated)

65990.9 Da

IEP (calculated)

7.068

GRAVY (calculated)

-0.477

Length

596 amino acids

Sequence
(BLAST)

001: MAPLKILLCG DVLGRLNQLF KRVSSVNKAA GPFDALLCVG QFFPDSVEGI EEFNGYIEGR SKIPMPTYFI GDYGAGSPKI LSEALKDPSN KGFKMEGLRV
101: CDNLYWLKGS GKFSLHGLSV AYLSGRRTPS GTQFGTYSQD DVDALRALAE DPGTVDIFLT NEWPSGVTNG TTSKALVEIS DSSGSDPTVS ELVTEIKPRY
201: HVAGTVGVYF DREPYANIDA LHATRFLGLA PVGNKDKQKF IHAISPTPAS TMSKTELSAK PPNTTLCPYT NVDKAAPPDG ATKRPGDSTS ESQYWRYDVS
301: KKKQKHGDGG GDRLCFKFVS SGSCPRGNQC QFRHDEEASE QYSRGVCFDF LNKGKCEKGP DCNFKHSLQE EGDRSASRAA SSNRSKECWF CLSSPNVESH
401: LITSVGEYYY CALAKGPLTP DHVLIMPIEH TPNTLSLPLE CEKELERLQS SFKAYFKKQG KEAVFFEWVF KRGSHANLQV VPIPSSRASA VRDIFNLAAD
501: KLGFKLTMVK EGRQALRTQF DRSCSLFYVE VPGGDILSHV IEENEKFPAQ FGREVLAGLL NIADRADWRN CKVDKEEETK MVERFKNGFQ EYDPNQ

Best Arabidopsis Sequence Match ( AT5G56900.2 )
(BLAST)

001: MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.