CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02709	Soybean	nucleus	81.36	90.56
VIT_11s0016g02130.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	69.72	70.66
PGSC0003DMT400000758	Potato	cytosol, extracellular, mitochondrion, nucleus	68.22	68.79
Solyc12g008890.1.1	Tomato	nucleus	13.81	65.87
Solyc12g008870.1.1	Tomato	nucleus	36.61	64.14
AT5G56900.2	Thale cress	mitochondrion	63.06	63.59
CDY32895	Canola	mitochondrion	62.56	63.19
GSMUA_Achr8P05530_001	Banana	cytosol, extracellular, mitochondrion, nucleus	62.56	62.25
CDY32752	Canola	mitochondrion	60.23	62.2
CDY33859	Canola	cytosol	12.15	61.86
Bra002785.1-P	Field mustard	mitochondrion, plastid	60.73	60.43
TraesCS5D01G198900.1	Wheat	plastid	60.23	59.54
TraesCS5A01G192000.1	Wheat	plastid	60.07	59.38
Zm00001d020242_P002	Maize	plastid	56.91	59.27
TraesCS5B01G191100.1	Wheat	plastid	59.9	59.21
Os09t0364000-01	Rice	plastid	59.57	58.4
KXG35490	Sorghum	plastid	58.74	58.15
HORVU5Hr1G057610.14	Barley	plastid	60.23	56.04
Solyc05g032650.1.1	Tomato	extracellular, golgi	23.63	50.9
KRG90984	Soybean	nucleus	15.97	12.24
KRH35769	Soybean	nucleus	15.64	11.96

Protein Annotations

EntrezGene:100782106	MapMan:15.5.16	Gene3D:3.30.428.10	Gene3D:4.10.1000.10	EMBL:ACUP02008170	InterPro:Cwf19-like_C_dom-1
InterPro:Cwf19-like_C_dom-2	EnsemblPlantsGene:GLYMA_13G104400	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:HIT-like_sf
InterPro:IPR000571	InterPro:IPR036265	UniProt:K7LYU8	EnsemblPlants:KRH19176	ProteinID:KRH19176	ProteinID:KRH19176.1
ProteinID:KRH19177.1	PFAM:PF04676	PFAM:PF04677	PFscan:PS50103	PANTHER:PTHR12072	PANTHER:PTHR12072:SF4
SMART:SM00356	SUPFAM:SSF54197	SUPFAM:SSF90229	UniParc:UPI000233BC0D	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:21903926..21908569

Molecular Weight (calculated)

66970.2 Da

IEP (calculated)

7.196

GRAVY (calculated)

-0.430

Length

601 amino acids

Sequence
(BLAST)

001: MAPRILLCGD VLGRLNQLFK RVSSVNKSAG PFDALLCVGQ FFPDSPEQLE DFTKYIEGGS HFPLPTYFVG DYGVAAPKLL LQASKDSANQ GFKMDGFKVC
101: HNLYWLKGSG KFSLFGLSVA YLSGRKSSSA QQFGTYTEDD VDALRAIAEE PGIVDLFLTN EWPSGVTNRA ADSDIPAGLS DAAGGDSTVS ELVQEIKPRY
201: HIAGTKGIYY AREPYSNVDA VHVTRFIGLA SVGNKDKQKF IHAISPTPAS TMSSTEIAMK TTNTTLSPYT YEEKRTSPMD STKRSSDSIS DPQYWRYDVS
301: QKRQKHEAGH GDKLCFKFVS SGSCPRGEKC NFRHDTDARE QCMRGVCFDF LNKGKCERGP DCNFKHSLQD EGGRLPSRRP GSGRSKECWF CLSSPNVESH
401: LIISIGENYY LALAKGPLVE DHVLIIPVEH MPSTLSMSSE SEIELSRFQN SLKSYCKSQE KEVIFFEWVS VRGTHANIQA IPIPSSKAIM AEKIFNLAAQ
501: KLGFEFVTKK FDSISEGRKF LKAQIDGDSS LFYAQIPGGT ILLHHVEEKE KFPAQFGREV LAGLLNMADN ADWRNRKHSK DEEMKIVEVF KSRFQEYDPN
601: C

Best Arabidopsis Sequence Match ( AT5G56900.2 )
(BLAST)

001: MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.