Factsheet for GSMUA_Achr8P05530_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008890.1.1	Tomato	nucleus	14.07	67.46
TraesCS5A01G192000.1	Wheat	plastid	66.23	65.79
KXG35490	Sorghum	plastid	66.06	65.73
TraesCS5D01G198900.1	Wheat	plastid	66.06	65.62
Zm00001d020242_P002	Maize	plastid	62.58	65.51
TraesCS5B01G191100.1	Wheat	plastid	65.89	65.46
Os09t0364000-01	Rice	plastid	65.89	64.93
VIT_11s0016g02130.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	63.74	64.92
KRH19176	Soybean	mitochondrion	62.25	62.56
PGSC0003DMT400000758	Potato	cytosol, extracellular, mitochondrion, nucleus	61.59	62.42
HORVU5Hr1G057610.14	Barley	plastid	65.89	61.61
KRH02709	Soybean	nucleus	53.48	59.81
Solyc12g008870.1.1	Tomato	nucleus	33.77	59.48
AT5G56900.2	Thale cress	mitochondrion	56.29	57.05
CDY32752	Canola	mitochondrion	53.81	55.84
CDY32895	Canola	mitochondrion	54.97	55.8
Bra002785.1-P	Field mustard	mitochondrion, plastid	54.3	54.3
CDY33859	Canola	cytosol	10.6	54.24
Solyc05g032650.1.1	Tomato	extracellular, golgi	22.19	48.03
CDX80571	Canola	extracellular	14.24	37.72
CDY61116	Canola	cytosol	3.81	18.85
GSMUA_Achr3P29250_001	Banana	nucleus	16.39	12.27

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.428.10	Gene3D:4.10.1000.10	InterPro:Cwf19-like_C_dom-1	InterPro:Cwf19-like_C_dom-2	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr8G05530_001	EnsemblPlants:GSMUA_Achr8P05530_001	EnsemblPlants:GSMUA_Achr8T05530_001	InterPro:HIT-like_sf	InterPro:IPR000571
InterPro:IPR036265	UniProt:M0TMV6	PFAM:PF04676	PFAM:PF04677	PFscan:PS50103	PANTHER:PTHR12072
PANTHER:PTHR12072:SF4	SMART:SM00356	SUPFAM:SSF54197	SUPFAM:SSF90229	UniParc:UPI000296040F	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

Zinc finger CCCH domain-containing protein 59 [Source:GMGC_GENE;Acc:GSMUA_Achr8G05530_001]

Coordinates

chr8:+:3601775..3610819

Molecular Weight (calculated)

66698.8 Da

IEP (calculated)

6.926

GRAVY (calculated)

-0.405

Length

604 amino acids

Sequence
(BLAST)

001: MATPPPRILL CGDVLGCLNH LFKRVQSVNK STGPFDALLC VGQFFPDSTD GLDEVADYIE GRSAVPIPTY FTGDYGVGAA RFLSAASKLP SNRGFKTDGL
101: EVCPNLFWLK GSGKFSLHGL SVVYLSGRQS SGADESGIYS EDDVGALRAL AEEQGIVDLF LTYPGVSNGA DPSNTPPVVA DPSGCDPLVS ELAAEIKPRY
201: HIAGTKGVFY AREPYTNNES VHVTRFLGLA AVGNKDKQKF IHAISPTPAS MMSSNEIHAR PPNTTMSPYS LGEKVSHARE TTKRPSDSDT QYWRYDTSQK
301: RQRQGENDSG RLCFKFTSTG SCSRGGKCHF RHDEEAREHY MRNVCFDFLN KGKCERGPDC KFGHSLAESG ASFPEKERAQ SGRGRTERSC WFCLSSPNVE
401: SHLVLSIGES YYCALAKGPL VPNHVLLVPV QHCPNTLTMP LDTETELEKY KSALNIYFKN QAKAVVFFEL IFPQSPHANL QAIPIPLSKA SNVKRIFNLA
501: SKKLGFEFAT LNPDGDSTQG RQLLRSQLNS TSSMFYVELP EGAILLHVVD DKEKFPVQFG REVMAGLLNM ADRADWRNCK LSKEDELQMV EEFKNGFREF
601: DPAQ

Best Arabidopsis Sequence Match ( AT5G56900.2 )
(BLAST)

001: MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.