Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G198900.1 | Wheat | plastid | 99.01 | 99.01 |
| TraesCS5B01G191100.1 | Wheat | plastid | 98.85 | 98.85 |
| HORVU5Hr1G057610.14 | Barley | plastid | 96.05 | 90.4 |
| Os09t0364000-01 | Rice | plastid | 83.72 | 83.03 |
| KXG35490 | Sorghum | plastid | 82.07 | 82.21 |
| Zm00001d020242_P002 | Maize | plastid | 76.32 | 80.42 |
| GSMUA_Achr8P05530_001 | Banana | cytosol, extracellular, mitochondrion, nucleus | 65.79 | 66.23 |
| KRH19176 | Soybean | mitochondrion | 59.38 | 60.07 |
| VIT_11s0016g02130.t01 | Wine grape | cytosol, extracellular, mitochondrion, plastid | 57.89 | 59.36 |
| PGSC0003DMT400000758 | Potato | cytosol, extracellular, mitochondrion, nucleus | 57.89 | 59.06 |
| Solyc12g008870.1.1 | Tomato | nucleus | 32.57 | 57.73 |
| AT5G56900.2 | Thale cress | mitochondrion | 56.41 | 57.55 |
| CDY32752 | Canola | mitochondrion | 54.93 | 57.39 |
| KRH02709 | Soybean | nucleus | 50.82 | 57.22 |
| CDY32895 | Canola | mitochondrion | 55.26 | 56.47 |
| Bra002785.1-P | Field mustard | mitochondrion, plastid | 54.93 | 55.3 |
| CDY33859 | Canola | cytosol | 10.03 | 51.69 |
| Solyc12g008890.1.1 | Tomato | nucleus | 10.69 | 51.59 |
| Solyc05g032650.1.1 | Tomato | extracellular, golgi | 21.22 | 46.24 |
| CDX80571 | Canola | extracellular | 13.82 | 36.84 |
| CDY61116 | Canola | cytosol | 3.62 | 18.03 |
| TraesCS5A01G380400.2 | Wheat | nucleus | 16.94 | 13.02 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.428.10 | Gene3D:4.10.1000.10 | InterPro:Cwf19-like_C_dom-1 | InterPro:Cwf19-like_C_dom-2 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0046872 | InterPro:HIT-like_sf | InterPro:IPR000571 | InterPro:IPR036265 | PFAM:PF04676 | PFAM:PF04677 |
| PFscan:PS50103 | PANTHER:PTHR12072 | PANTHER:PTHR12072:SF4 | SMART:SM00356 | SUPFAM:SSF54197 | SUPFAM:SSF90229 |
| EnsemblPlantsGene:TraesCS5A01G192000 | EnsemblPlants:TraesCS5A01G192000.1 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | TIGR:cd07380 | : |
Description
No Description!
Coordinates
chr5A:-:395869472..395873085
Molecular Weight (calculated)
66781.9 Da
IEP (calculated)
6.816
GRAVY (calculated)
-0.393
Length
608 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAPSPAPP RILLAGDAHG RLHQLFKRVK SVNQSTGPFH ALLCVGQFFP PEAAEGDSPP GDVADYLEGR AAVPIPTYFT GDYGPTAPRL LSKAAADARG
101: FNPGGIEICP NLFWLKGSAL FNLHGLSVAY LSGRKGLGGP GCYSQDDVDA LRALAEEPGI VDLFLTNEWP AGVVDGADTS KVPPQVLDPQ GYDPVVAELV
201: AEIKPRYHIA GTKGVFYARE PYVNDSSPHV TRFIGLANVG NKEKQKFIHA ISPTPASTMS SADIHARPPN ATLSPYAAPA KSVHAEDTPK RPAESTDLQY
301: WRYDVKRQRQ GQTDGSLLCF KYTSSGSCPR GSKCNFRHDE EAREHCQRNV CFDFLNKGKC ERGPECRFAH SLTEEAAARD AKPRSERRRV ESSCWFCLSS
401: PDVESHLVIS IGDGYYCALA KGPLVPDHVL VIPVEHFPTT IAMPVEPEAE LRRYKDSLGK YFEKRGRAAV YFEWVSQQSR HANLQAVPVP LSKAANVKKI
501: FHLAAQRLGF EFSVVNPDGD ANQGRELLRS QYDGKSGLFY VELPDGTLLL HIIDSGEKFP AQFGREVLAG LLSMADRADW RNCKLSKEEE VKMVDDFKQG
601: FHEFDPAE
101: FNPGGIEICP NLFWLKGSAL FNLHGLSVAY LSGRKGLGGP GCYSQDDVDA LRALAEEPGI VDLFLTNEWP AGVVDGADTS KVPPQVLDPQ GYDPVVAELV
201: AEIKPRYHIA GTKGVFYARE PYVNDSSPHV TRFIGLANVG NKEKQKFIHA ISPTPASTMS SADIHARPPN ATLSPYAAPA KSVHAEDTPK RPAESTDLQY
301: WRYDVKRQRQ GQTDGSLLCF KYTSSGSCPR GSKCNFRHDE EAREHCQRNV CFDFLNKGKC ERGPECRFAH SLTEEAAARD AKPRSERRRV ESSCWFCLSS
401: PDVESHLVIS IGDGYYCALA KGPLVPDHVL VIPVEHFPTT IAMPVEPEAE LRRYKDSLGK YFEKRGRAAV YFEWVSQQSR HANLQAVPVP LSKAANVKKI
501: FHLAAQRLGF EFSVVNPDGD ANQGRELLRS QYDGKSGLFY VELPDGTLLL HIIDSGEKFP AQFGREVLAG LLSMADRADW RNCKLSKEEE VKMVDDFKQG
601: FHEFDPAE
001: MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ
Arabidopsis Description
Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.