Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020242_P002 | Maize | plastid | 89.29 | 93.93 |
| TraesCS5D01G198900.1 | Wheat | plastid | 82.21 | 82.07 |
| TraesCS5A01G192000.1 | Wheat | plastid | 82.21 | 82.07 |
| TraesCS5B01G191100.1 | Wheat | plastid | 81.88 | 81.74 |
| Os09t0364000-01 | Rice | plastid | 82.54 | 81.73 |
| HORVU5Hr1G057610.14 | Barley | plastid | 81.38 | 76.47 |
| GSMUA_Achr8P05530_001 | Banana | cytosol, extracellular, mitochondrion, nucleus | 65.73 | 66.06 |
| VIT_11s0016g02130.t01 | Wine grape | cytosol, extracellular, mitochondrion, plastid | 58.98 | 60.37 |
| PGSC0003DMT400000758 | Potato | cytosol, extracellular, mitochondrion, nucleus | 58.65 | 59.73 |
| KRH19176 | Soybean | mitochondrion | 58.15 | 58.74 |
| Solyc12g008870.1.1 | Tomato | nucleus | 33.11 | 58.6 |
| KRH02709 | Soybean | nucleus | 50.58 | 56.85 |
| CDY32752 | Canola | mitochondrion | 54.37 | 56.7 |
| AT5G56900.2 | Thale cress | mitochondrion | 55.52 | 56.54 |
| CDY32895 | Canola | mitochondrion | 54.53 | 55.63 |
| Bra002785.1-P | Field mustard | mitochondrion, plastid | 54.37 | 54.64 |
| CDY33859 | Canola | cytosol | 10.21 | 52.54 |
| Solyc12g008890.1.1 | Tomato | nucleus | 10.71 | 51.59 |
| Solyc05g032650.1.1 | Tomato | extracellular, golgi | 21.25 | 46.24 |
| CDX80571 | Canola | extracellular | 14.0 | 37.28 |
| CDY61116 | Canola | cytosol | 3.46 | 17.21 |
| EER93483 | Sorghum | nucleus | 16.47 | 13.09 |
Protein Annotations
| Gene3D:1.10.150.840 | MapMan:15.5.16 | Gene3D:3.30.428.10 | UniProt:A0A1B6QC64 | InterPro:Cwf19-like_C_dom-1 | InterPro:Cwf19-like_C_dom-2 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0046872 | InterPro:HIT-like_sf | InterPro:IPR000571 | InterPro:IPR036265 |
| EnsemblPlants:KXG35490 | ProteinID:KXG35490 | ProteinID:KXG35490.1 | PFAM:PF04676 | PFAM:PF04677 | PFscan:PS50103 |
| PANTHER:PTHR12072 | PANTHER:PTHR12072:SF4 | SMART:SM00356 | EnsemblPlantsGene:SORBI_3002G182000 | SUPFAM:SSF54197 | SUPFAM:SSF90229 |
| UniParc:UPI00081AE6FF | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:+:56339918..56344205
Molecular Weight (calculated)
66629.3 Da
IEP (calculated)
6.935
GRAVY (calculated)
-0.326
Length
607 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATPPAPAP PRILLAGDAH GRLHQLFKRV KSVNQSTGPF HALLCVGQFF SPEGDAEGAP GDVADYIEGR ASVPIPTYFT GDYGPSAPRL LSKAAAGARG
101: FAPGGIEICP NLFWLRGSNR FTLHGLSVVY LSGRKGLGGP GCYSQDDVDA LRALAEEPGI VDLFLTNEWP TGVVSGADTS NVPNQVLDPI GYDPIVAELV
201: AEIKPRYHIA GTKGVFYSRE PYVNDSAAHV TRFIGLANVG NKEKQKFIHA ISPTPASVMS SADIHAKPPN ATLSPYVGPS KSVPIEEAPK RPAENIDSQY
301: WRYDVKRQRH GEADGGGLCF KFTSSGSCQR GSKCNYRHDE EALEHYQRNV CFDFLNKGKC ERGPECKFVH SLSGETALRD ARPRSERRRV ESSCWFCLSS
401: PDVESHLVIS IGEGYYCTLA KGPLVPNHVL MIPVEHCPNT LMMPPEAEAE LGRYKIALGK YFEKQGKTAV YFEWVSPRSH HANLQVVPVP LPKADAVNKI
501: FHLAAKKLGF EFSMVNPDGA KTARESLMSQ CESKSGMFYV ELPEGRILLH MIDSNEKFPV QFGREVLAGL LSMADCADWR NCKISKEEEI KMVDDFKQGF
601: HEFDPAE
101: FAPGGIEICP NLFWLRGSNR FTLHGLSVVY LSGRKGLGGP GCYSQDDVDA LRALAEEPGI VDLFLTNEWP TGVVSGADTS NVPNQVLDPI GYDPIVAELV
201: AEIKPRYHIA GTKGVFYSRE PYVNDSAAHV TRFIGLANVG NKEKQKFIHA ISPTPASVMS SADIHAKPPN ATLSPYVGPS KSVPIEEAPK RPAENIDSQY
301: WRYDVKRQRH GEADGGGLCF KFTSSGSCQR GSKCNYRHDE EALEHYQRNV CFDFLNKGKC ERGPECKFVH SLSGETALRD ARPRSERRRV ESSCWFCLSS
401: PDVESHLVIS IGEGYYCTLA KGPLVPNHVL MIPVEHCPNT LMMPPEAEAE LGRYKIALGK YFEKQGKTAV YFEWVSPRSH HANLQVVPVP LPKADAVNKI
501: FHLAAKKLGF EFSMVNPDGA KTARESLMSQ CESKSGMFYV ELPEGRILLH MIDSNEKFPV QFGREVLAGL LSMADCADWR NCKISKEEEI KMVDDFKQGF
601: HEFDPAE
001: MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ
Arabidopsis Description
Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.