CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002785.1-P	Field mustard	mitochondrion, plastid	99.48	95.86
CDY32895	Canola	mitochondrion	95.02	92.94
AT5G56900.2	Thale cress	mitochondrion	89.86	87.75
CDY33859	Canola	cytosol	14.6	72.03
VIT_11s0016g02130.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	63.23	62.06
Solyc12g008890.1.1	Tomato	nucleus	13.23	61.11
KRH19176	Soybean	mitochondrion	62.2	60.23
PGSC0003DMT400000758	Potato	cytosol, extracellular, mitochondrion, nucleus	61.51	60.07
Solyc12g008870.1.1	Tomato	nucleus	34.36	58.31
KRH02709	Soybean	nucleus	53.78	57.96
Zm00001d020242_P002	Maize	plastid	55.84	56.33
TraesCS5A01G192000.1	Wheat	plastid	57.39	54.93
TraesCS5B01G191100.1	Wheat	plastid	57.39	54.93
TraesCS5D01G198900.1	Wheat	plastid	57.22	54.77
KXG35490	Sorghum	plastid	56.7	54.37
GSMUA_Achr8P05530_001	Banana	cytosol, extracellular, mitochondrion, nucleus	55.84	53.81
Os09t0364000-01	Rice	plastid	56.53	53.67
HORVU5Hr1G057610.14	Barley	plastid	57.22	51.55
Solyc05g032650.1.1	Tomato	extracellular, golgi	22.85	47.67
CDX80571	Canola	extracellular	16.67	42.54
CDY61116	Canola	cytosol	3.26	15.57
CDY41723	Canola	nucleus	15.12	13.1
CDY53572	Canola	nucleus	14.95	13.0

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.428.10	Gene3D:4.10.1000.10	GO:A0A078H5L3	UniProt:A0A078H5L3	EnsemblPlants:CDY32752
ProteinID:CDY32752	ProteinID:CDY32752.1	InterPro:Cwf19-like_C_dom-1	InterPro:Cwf19-like_C_dom-2	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00052808001	InterPro:HIT-like_sf	InterPro:IPR000571	InterPro:IPR036265	PFAM:PF04676
PFAM:PF04677	PFscan:PS50103	PANTHER:PTHR12072	PANTHER:PTHR12072:SF4	SMART:SM00356	SUPFAM:SSF54197
SUPFAM:SSF90229	UniParc:UPI0004EE3B32	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:

Description

BnaA10g10970DBnaA10g10970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5L3]

Coordinates

chrLK032299:+:23746..27176

Molecular Weight (calculated)

64739.5 Da

IEP (calculated)

6.616

GRAVY (calculated)

-0.421

Length

582 amino acids

Sequence
(BLAST)

001: MAPRILLCGD PVGRLSQLFK RVQSVSKSAG PFDALICVGQ FFPDSPELLD DFLDYAQGRA QIPIPTYFTG DYGVSAPKIL SATAKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFTLHGLSVA YLSGRESCDG QFGKYSQDDV DALRALADDS GVVDLAKESD IPAHVSDSSF CDSNVSELVK EVKPRYHIAG SMGVFYAREP
201: YLNVDSSHVT RFLGLAQVGN KNKQKFLHAL SPTPTSTMSP SELSAKPPNT TLCPYTLQEG AAESKKRSND DASDSQYWRY DVSKRQKNGS DGEKLCFKFV
301: CSGSCPRGES CHFQHNAEAR EQCRRGVCLD LIIKGKCEKG PECSYKHEFQ DLSVQRKPRS ENANRSKECW FCLSSPSVES HLIVSVGESF YCALPKGSLV
401: DDHILIIPIE HLPNTLALSP EGESELSRYR NGLRNCYKSQ GNDAVFFELV SKRVSHANLQ VVPVPSSRAR LLPNIFSLAA EKLGFKLVTK KFSDSSEGRK
501: YLQKEYDAAL GLFYVELPDG TVLSHTLEEN EVFPAQFGRE VLAGLLKIPD RADWRNCKIS QEEEAKLVED FKKQFQEFDP FE

Best Arabidopsis Sequence Match ( AT5G56900.2 )
(BLAST)

001: MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.