Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32895 | Canola | mitochondrion | 90.44 | 90.59 |
| CDY32752 | Canola | mitochondrion | 87.75 | 89.86 |
| Bra002785.1-P | Field mustard | mitochondrion, plastid | 88.25 | 87.09 |
| CDY33859 | Canola | cytosol | 14.26 | 72.03 |
| Solyc12g008890.1.1 | Tomato | nucleus | 13.59 | 64.29 |
| VIT_11s0016g02130.t01 | Wine grape | cytosol, extracellular, mitochondrion, plastid | 63.09 | 63.41 |
| KRH19176 | Soybean | mitochondrion | 63.59 | 63.06 |
| PGSC0003DMT400000758 | Potato | cytosol, extracellular, mitochondrion, nucleus | 62.42 | 62.42 |
| KRH02709 | Soybean | nucleus | 55.87 | 61.67 |
| Solyc12g008870.1.1 | Tomato | nucleus | 33.56 | 58.31 |
| TraesCS5B01G191100.1 | Wheat | plastid | 57.55 | 56.41 |
| TraesCS5A01G192000.1 | Wheat | plastid | 57.55 | 56.41 |
| GSMUA_Achr8P05530_001 | Banana | cytosol, extracellular, mitochondrion, nucleus | 57.05 | 56.29 |
| TraesCS5D01G198900.1 | Wheat | plastid | 57.38 | 56.25 |
| Zm00001d020242_P002 | Maize | plastid | 54.36 | 56.15 |
| KXG35490 | Sorghum | plastid | 56.54 | 55.52 |
| Os09t0364000-01 | Rice | plastid | 56.88 | 55.3 |
| HORVU5Hr1G057610.14 | Barley | plastid | 57.55 | 53.1 |
| Solyc05g032650.1.1 | Tomato | extracellular, golgi | 21.81 | 46.59 |
| AT1G56290.1 | Thale cress | nucleus | 15.94 | 13.73 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.428.10 | Gene3D:4.10.1000.10 | EntrezGene:835792 | ProteinID:AED96821.1 | ArrayExpress:AT5G56900 |
| EnsemblPlantsGene:AT5G56900 | RefSeq:AT5G56900 | TAIR:AT5G56900 | RefSeq:AT5G56900-TAIR-G | EnsemblPlants:AT5G56900.2 | TAIR:AT5G56900.2 |
| Unigene:At.29358 | ProteinID:BAA97020.1 | EMBL:BT002740 | InterPro:Cwf19-like_C_dom-1 | InterPro:Cwf19-like_C_dom-2 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0046872 | InterPro:HIT-like_sf | InterPro:IPR000571 | InterPro:IPR036265 |
| RefSeq:NP_974945.2 | PFAM:PF04676 | PFAM:PF04677 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50103 | PANTHER:PTHR12072 | PANTHER:PTHR12072:SF4 |
| UniProt:Q84WU9 | SMART:SM00356 | SUPFAM:SSF54197 | SUPFAM:SSF90229 | UniParc:UPI000000BD97 | InterPro:Znf_CCCH |
| InterPro:Znf_CCCH_sf | SEG:seg | : | : | : | : |
Description
Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
Coordinates
chr5:-:23019245..23022765
Molecular Weight (calculated)
66424.6 Da
IEP (calculated)
6.567
GRAVY (calculated)
-0.423
Length
596 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.