Factsheet for Solyc12g008870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000758	Potato	cytosol, extracellular, mitochondrion, nucleus	95.34	54.87
Solyc05g032650.1.1	Tomato	extracellular, golgi	33.82	41.58
VIT_11s0016g02130.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	67.06	38.79
KRH19176	Soybean	mitochondrion	64.14	36.61
CDY32752	Canola	mitochondrion	58.31	34.36
CDY32895	Canola	mitochondrion	58.89	33.95
GSMUA_Achr8P05530_001	Banana	cytosol, extracellular, mitochondrion, nucleus	59.48	33.77
AT5G56900.2	Thale cress	mitochondrion	58.31	33.56
Zm00001d020242_P002	Maize	plastid	56.27	33.45
KXG35490	Sorghum	plastid	58.6	33.11
Bra002785.1-P	Field mustard	mitochondrion, plastid	58.31	33.11
TraesCS5D01G198900.1	Wheat	plastid	58.02	32.73
TraesCS5A01G192000.1	Wheat	plastid	57.73	32.57
TraesCS5B01G191100.1	Wheat	plastid	57.43	32.4
Os09t0364000-01	Rice	plastid	57.73	32.3
HORVU5Hr1G057610.14	Barley	plastid	58.31	30.96
KRH02709	Soybean	nucleus	48.1	30.56
Solyc09g083420.2.1	Tomato	nucleus	17.49	7.75
Solyc12g008890.1.1	Tomato	nucleus	0.29	0.79
CDY33859	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.428.10	Gene3D:4.10.1000.10	InterPro:Cwf19-like_C_dom-1	InterPro:Cwf19-like_C_dom-2	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:HIT-like_sf	InterPro:IPR000571	InterPro:IPR036265	UniProt:K4DBX5
PFAM:PF04676	PFAM:PF04677	PFscan:PS50103	PANTHER:PTHR12072	PANTHER:PTHR12072:SF4	SMART:SM00356
SUPFAM:SSF54197	SUPFAM:SSF90229	EnsemblPlantsGene:Solyc12g008870.1	EnsemblPlants:Solyc12g008870.1.1	UniParc:UPI00027696D5	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:2199225..2202063

Molecular Weight (calculated)

38399.0 Da

IEP (calculated)

7.395

GRAVY (calculated)

-0.701

Length

343 amino acids

Sequence
(BLAST)

001: MSKTELSAKP PNATSCPYTN VDKAAQPDGA TKRPGDGTSE SQYWRYDVSK KKQKHGDGGG DRLCFKFASS GSCPRGNQCH FRHDEEASEQ YSRGVCFDFL
101: NKGKCEKGPD CNFKHSLQEE GDRSASGTAS SNRSRECWFC LSSPNVESHL ITSVGEYYYC ALAKGPLTPD HVLIMPIEHT PNTLSLPLEC EKELERLQSS
201: LKAYFKKQGK EAVFFEFVRG SHANLQVVPI PSSRASAVRD IFNLAADKLG FKLSMVKEGR QALRTQFDRS CSLFYVEVPG GDILSHVIEE NEKFPAQFGR
301: EVLAGLLNIA DRADWRNCKV SKEEETKMAE RFKNGFQEYD PNQ

Best Arabidopsis Sequence Match ( AT5G56900.1 )
(BLAST)

001: MEVKPRYHIA GSMGVFYARE PYLNAESTHV TRFIGLAQVG NKNKQKFLHA LSPTPTSTMS PAELSAKPPK TTLWPYNLQD GAAESKKRPN DSDSDSQYWR
101: YDVPKRQKSG SQGEKLCFKF VCSGSCPRGE DCHFQHNAEA REQCRRGVCL DLIIKGKCEK GPECSYKHEF QDESSIQRKP RSENANRSKE CWFCLSSPSV
201: ESHLIVSVGE SFYCALPKGS LVEDHILIIP IEHLPNTLVL SPEVESELSR YQNGLRNCYK SQGNDAVFFE LVSKRVSHAN LQVVPVPSSR ARLLPNIFSL
301: AAEKLGFKLV TKKFNDSTDG RKYLQKEYNA ALGLFYVELP DGTVLSHTLE ENEVFPAQFG REVLAGLLKI PDRADWRNCK ISQEEEAKLA EDFKKQFQEF
401: DPCQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.