CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19176	Soybean	mitochondrion	90.56	81.36
Solyc12g008890.1.1	Tomato	nucleus	15.37	65.87
CDY33859	Canola	cytosol	13.7	62.71
VIT_11s0016g02130.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	67.41	61.38
PGSC0003DMT400000758	Potato	cytosol, extracellular, mitochondrion, nucleus	65.56	59.4
AT5G56900.2	Thale cress	mitochondrion	61.67	55.87
CDY32895	Canola	mitochondrion	60.56	54.96
CDY32752	Canola	mitochondrion	57.96	53.78
GSMUA_Achr8P05530_001	Banana	cytosol, extracellular, mitochondrion, nucleus	59.81	53.48
Bra002785.1-P	Field mustard	mitochondrion, plastid	58.52	52.32
Zm00001d020242_P002	Maize	plastid	54.63	51.13
TraesCS5D01G198900.1	Wheat	plastid	57.41	50.99
Solyc05g032650.1.1	Tomato	extracellular, golgi	26.3	50.9
TraesCS5A01G192000.1	Wheat	plastid	57.22	50.82
Os09t0364000-01	Rice	plastid	57.59	50.73
TraesCS5B01G191100.1	Wheat	plastid	57.04	50.66
KXG35490	Sorghum	plastid	56.85	50.58
Solyc12g008870.1.1	Tomato	nucleus	30.56	48.1
HORVU5Hr1G057610.14	Barley	plastid	57.41	47.99
KRG90984	Soybean	nucleus	15.56	10.71
KRH35769	Soybean	nucleus	15.19	10.43

Protein Annotations

EntrezGene:100809090	MapMan:15.5.16	Gene3D:3.30.428.10	Gene3D:4.10.1000.10	UniProt:A0A0R0FJU9	EMBL:ACUP02010313
InterPro:Cwf19-like_C_dom-1	EnsemblPlantsGene:GLYMA_17G054700	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:HIT-like_sf
InterPro:IPR000571	InterPro:IPR036265	EnsemblPlants:KRH02709	ProteinID:KRH02709	ProteinID:KRH02709.1	PFAM:PF00642
PFAM:PF04677	PFscan:PS50103	PANTHER:PTHR12072	PANTHER:PTHR12072:SF4	SMART:SM00356	SUPFAM:SSF54197
SUPFAM:SSF90229	UniParc:UPI0003DE80D4	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:4163688..4166980

Molecular Weight (calculated)

60260.6 Da

IEP (calculated)

7.931

GRAVY (calculated)

-0.355

Length

540 amino acids

Sequence
(BLAST)

001: MAPRILLCGD VLGRLNQLFK RVSSVNKSAG PFDALLCVGQ FFPDSPEQLE DFTKYIEGGS HFPLPTYFIG DYGVAAPKLL LQASKDSANQ GFKMDGFKVC
101: HNLYWLKGSG KFPLFGLSVA YLSGRKSSSG QQFGNYTEDD VDALRAIAEE PGVVDLFLTN EWPNGVTNRA ADSDIPAGLS DGSDSTVSEL VQEIKPRYHI
201: AGTKGIYYAR EPYSNVDAVH VTRFIGLASV GNRDKQKFIH AISPTPASTM SSTEIAMKTT NTTLSPYTFK EKRTSPMDSA KRSSDSISDP QYWRYDVAQK
301: RQKHEAGHGD KLCFKFVSSG SCPRGEKCNF QHDTDAREQC MRGVCFDFLN KGKCERGPDC NFKHSLQDEG NRLPSRRPGS GRSKECWFCL SSPNVESHLI
401: ISIGENYYLA LAKGPLVEDH VLIIPVEHMP STLSMPPESE IELSRFQNSL RSYCKSQEKE FIFFEWVSIR GTHANLQAIP IPSSKAIMVE KVFNLAAQKL
501: GFEFVAKKCK HYSSEHASYF IAYVVCFRPE SIKFLTLLFP

Best Arabidopsis Sequence Match ( AT5G56900.2 )
(BLAST)

001: MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.