Factsheet for Solyc12g008890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000758	Potato	cytosol, extracellular, mitochondrion, nucleus	89.68	18.96
KRH02709	Soybean	nucleus	65.87	15.37
VIT_11s0016g02130.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	69.84	14.84
GSMUA_Achr8P05530_001	Banana	cytosol, extracellular, mitochondrion, nucleus	67.46	14.07
KRH19176	Soybean	mitochondrion	65.87	13.81
AT5G56900.2	Thale cress	mitochondrion	64.29	13.59
CDY32895	Canola	mitochondrion	62.7	13.28
CDY32752	Canola	mitochondrion	61.11	13.23
Bra002785.1-P	Field mustard	mitochondrion, plastid	62.7	13.08
CDY33859	Canola	cytosol	11.11	11.86
Solyc05g032650.1.1	Tomato	extracellular, golgi	25.4	11.47
Zm00001d020242_P002	Maize	plastid	50.0	10.92
KXG35490	Sorghum	plastid	51.59	10.71
TraesCS5A01G192000.1	Wheat	plastid	51.59	10.69
TraesCS5B01G191100.1	Wheat	plastid	50.79	10.53
TraesCS5D01G198900.1	Wheat	plastid	50.79	10.53
Os09t0364000-01	Rice	plastid	49.21	10.11
HORVU5Hr1G057610.14	Barley	plastid	50.79	9.91
Solyc09g083420.2.1	Tomato	nucleus	14.29	2.33
Solyc12g008870.1.1	Tomato	nucleus	0.79	0.29

Protein Annotations

EnsemblPlants:Solyc12g008890.1.1	EnsemblPlantsGene:Solyc12g008890.1	PANTHER:PTHR12072	PANTHER:PTHR12072:SF4	UniParc:UPI00027696D7	UniProt:K4DBX7
MapMan:15.5.16	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:2203850..2207029

Molecular Weight (calculated)

13758.9 Da

IEP (calculated)

8.626

GRAVY (calculated)

0.121

Length

126 amino acids

Sequence
(BLAST)

001: MAPLKILLCG DVLGRLNHLF KRVSSVNKAA GPFDALLCVG QFFPDSVEGI DEFNGYIEGR SKIPIPTYFI GDYGAGSPKI LSEALKDPSN KGFKMEGLRV
101: CDNLYWLKGS GKFSLNGKVI CGILIW

Best Arabidopsis Sequence Match ( AT5G56900.2 )
(BLAST)

001: MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.