Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G198900.1 | Wheat | plastid | 91.02 | 96.71 |
| TraesCS5B01G191100.1 | Wheat | plastid | 91.02 | 96.71 |
| TraesCS5A01G192000.1 | Wheat | plastid | 90.4 | 96.05 |
| Os09t0364000-01 | Rice | plastid | 77.86 | 82.06 |
| KXG35490 | Sorghum | plastid | 76.47 | 81.38 |
| Zm00001d020242_P002 | Maize | plastid | 72.14 | 80.76 |
| GSMUA_Achr8P05530_001 | Banana | cytosol, extracellular, mitochondrion, nucleus | 61.61 | 65.89 |
| KRH19176 | Soybean | mitochondrion | 56.04 | 60.23 |
| PGSC0003DMT400000758 | Potato | cytosol, extracellular, mitochondrion, nucleus | 54.95 | 59.56 |
| VIT_11s0016g02130.t01 | Wine grape | cytosol, extracellular, mitochondrion, plastid | 54.49 | 59.36 |
| Solyc12g008870.1.1 | Tomato | nucleus | 30.96 | 58.31 |
| AT5G56900.2 | Thale cress | mitochondrion | 53.1 | 57.55 |
| KRH02709 | Soybean | nucleus | 47.99 | 57.41 |
| CDY32752 | Canola | mitochondrion | 51.55 | 57.22 |
| CDY32895 | Canola | mitochondrion | 51.86 | 56.3 |
| Bra002785.1-P | Field mustard | mitochondrion, plastid | 51.55 | 55.13 |
| CDY33859 | Canola | cytosol | 9.44 | 51.69 |
| Solyc12g008890.1.1 | Tomato | nucleus | 9.91 | 50.79 |
| Solyc05g032650.1.1 | Tomato | extracellular, golgi | 20.12 | 46.59 |
| CDX80571 | Canola | extracellular | 12.69 | 35.96 |
| CDY61116 | Canola | cytosol | 3.25 | 17.21 |
| HORVU5Hr1G094010.1 | Barley | plastid | 17.34 | 12.79 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.428.10 | Gene3D:4.10.1000.10 | UniProt:A0A287RCM8 | InterPro:Cwf19-like_C_dom-1 | InterPro:Cwf19-like_C_dom-2 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0046872 | InterPro:HIT-like_sf | EnsemblPlantsGene:HORVU5Hr1G057610 | EnsemblPlants:HORVU5Hr1G057610.14 | InterPro:IPR000571 |
| InterPro:IPR036265 | PFAM:PF04676 | PFAM:PF04677 | PFscan:PS50103 | PANTHER:PTHR12072 | PANTHER:PTHR12072:SF4 |
| SMART:SM00356 | SUPFAM:SSF54197 | SUPFAM:SSF90229 | UniParc:UPI000B467ED3 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:451713178..451717327
Molecular Weight (calculated)
69758.8 Da
IEP (calculated)
7.692
GRAVY (calculated)
-0.364
Length
646 amino acids
Sequence
(BLAST)
(BLAST)
001: LFLHPSASRK SLLKPLMAAA PSPAPPRILL AGDAHGRLHQ LFKRVKSVNQ STGPFHALLC VGQFFPPEVP EGDSPPGDVA DYLEGRAAVP IPTYFTGDYG
101: PTAPRLLSKA AADARGFNPG GIEICPNLFW LRGSALFNLH GLSVAYLSGR KGLGGPGCYS QDDVDALRAL AEEPGIVDLF LTNEWPAGVV DGTDTSKVSP
201: QVLDSQGYDP VVAELVAEIK PRYHIAGTKG IFYAREPYVN DSSPHVTRFI GLANVGNKEK QKFIHAISPT PASTMSSADI LARPPNATLS PYAAPAKSVH
301: VEDTPKRPAE STDLQYWRYD VKRQRQGQAD GSLLCFKYTS SGSCPRGSKC NFRHDEEARE HCQRNVCFDF LNKGKCERGP ECRFAHSLTE EATLKDAKPR
401: SERRRVESSC WFCLSSPDVE SHLVISIGDG YYCALAKGPL VPDHVLMIPV EHFPTTITMP VEPEAELRRY KNSLSKYFKK QGKAAVYFEW VSQQSRHANL
501: QAVPLPLSKA ANVKKIFHLA AQRLGFEFSV VNPDGDANQG RELLRSQYDG KSGLFYVELP DGTLLLHMID SGEKFPAQFG REVLAGLLSM ADRADWRNCK
601: LSKEEEVKMV DDFKQGFREF DPAXXXXXXX XXXXXTTFSS REALGG
101: PTAPRLLSKA AADARGFNPG GIEICPNLFW LRGSALFNLH GLSVAYLSGR KGLGGPGCYS QDDVDALRAL AEEPGIVDLF LTNEWPAGVV DGTDTSKVSP
201: QVLDSQGYDP VVAELVAEIK PRYHIAGTKG IFYAREPYVN DSSPHVTRFI GLANVGNKEK QKFIHAISPT PASTMSSADI LARPPNATLS PYAAPAKSVH
301: VEDTPKRPAE STDLQYWRYD VKRQRQGQAD GSLLCFKYTS SGSCPRGSKC NFRHDEEARE HCQRNVCFDF LNKGKCERGP ECRFAHSLTE EATLKDAKPR
401: SERRRVESSC WFCLSSPDVE SHLVISIGDG YYCALAKGPL VPDHVLMIPV EHFPTTITMP VEPEAELRRY KNSLSKYFKK QGKAAVYFEW VSQQSRHANL
501: QAVPLPLSKA ANVKKIFHLA AQRLGFEFSV VNPDGDANQG RELLRSQYDG KSGLFYVELP DGTLLLHMID SGEKFPAQFG REVLAGLLSM ADRADWRNCK
601: LSKEEEVKMV DDFKQGFREF DPAXXXXXXX XXXXXTTFSS REALGG
001: MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ
Arabidopsis Description
Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.