Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33859 | Canola | cytosol | 32.02 | 61.86 |
| CDY32895 | Canola | mitochondrion | 50.44 | 19.33 |
| CDY32752 | Canola | mitochondrion | 42.54 | 16.67 |
| GSMUA_Achr8P05530_001 | Banana | cytosol, extracellular, mitochondrion, nucleus | 37.72 | 14.24 |
| KXG35490 | Sorghum | plastid | 37.28 | 14.0 |
| Os09t0364000-01 | Rice | plastid | 37.28 | 13.87 |
| TraesCS5A01G192000.1 | Wheat | plastid | 36.84 | 13.82 |
| TraesCS5D01G198900.1 | Wheat | plastid | 36.84 | 13.82 |
| TraesCS5B01G191100.1 | Wheat | plastid | 36.4 | 13.65 |
| Zm00001d020242_P002 | Maize | plastid | 33.33 | 13.17 |
| HORVU5Hr1G057610.14 | Barley | plastid | 35.96 | 12.69 |
| CDY41723 | Canola | nucleus | 11.4 | 3.87 |
| CDY53572 | Canola | nucleus | 10.96 | 3.74 |
| CDY61116 | Canola | cytosol | 0.44 | 0.82 |
Protein Annotations
| EnsemblPlants:CDX80571 | EnsemblPlantsGene:GSBRNA2T00133693001 | PANTHER:PTHR12072 | PANTHER:PTHR12072:SF4 | ProteinID:CDX80571 | ProteinID:CDX80571.1 |
| SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0004EE275D | MapMan:15.5.16 | : | : |
Description
BnaC07g28730D
Coordinates
chrLK031821:+:1382488..1384117
Molecular Weight (calculated)
25289.1 Da
IEP (calculated)
9.334
GRAVY (calculated)
-0.185
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGLVVAHIL FWLRGSGKFT LLGLSVSYLS GTESSDGQFG KYSQDDVDAL RALADDSGVV DFLFTNEWPV GVTNRAAEKL NLVIPLQVRW GVFYAREPYL
101: NVDSSHVTRF LGLAQVGNKN KQNSKTISIV GDGLRKEKTL WFLKKVTSLA SFSNTSLSFC WFNSISRDYA EPLNKVATYT TTVKEGSSGK PVVVAAAPPR
201: SKDQERALKP VRKVRFVLDN DEDLRDIC
101: NVDSSHVTRF LGLAQVGNKN KQNSKTISIV GDGLRKEKTL WFLKKVTSLA SFSNTSLSFC WFNSISRDYA EPLNKVATYT TTVKEGSSGK PVVVAAAPPR
201: SKDQERALKP VRKVRFVLDN DEDLRDIC
001: MDGLEVCHNL FWLRGSGKFS LHGLSVAYLS GRQSSESQFG KYSQDDVDAL RALAEEPGGV DLFLTNEWPA GVTNRAAVSD IPVGISDSSC SDSTVSELVM
101: EVKPRYHIAG SMGVFYAREP YLNAESTHVT RFIGLAQVGN KNKQKFLHAL SPTPTSTMSP AELSAKPPKT TLWPYNLQDG AAESKKRPND SDSDSQYWRY
201: DVPKRQKSGS QGEKLCFKFV CSGSCPRGED CHFQHNAEAR EQCRRGVCLD LIIKGKCEKG PECSYKHEFQ DESSIQRKPR SENANRSKEC WFCLSSPSVE
301: SHLIVSVGES FYCALPKGSL VEDHILIIPI EHLPNTLVLS PEVESELSRY QNGLRNCYKS QGNDAVFFEL VSKRVSHANL QVVPVPSSRA RLLPNIFSLA
401: AEKLGFKLVT KKFNDSTDGR KYLQKEYNAA LGLFYVELPD GTVLSHTLEE NEVFPAQFGR EVLAGLLKIP DRADWRNCKI SQEEEAKLAE DFKKQFQEFD
501: PCQ
101: EVKPRYHIAG SMGVFYAREP YLNAESTHVT RFIGLAQVGN KNKQKFLHAL SPTPTSTMSP AELSAKPPKT TLWPYNLQDG AAESKKRPND SDSDSQYWRY
201: DVPKRQKSGS QGEKLCFKFV CSGSCPRGED CHFQHNAEAR EQCRRGVCLD LIIKGKCEKG PECSYKHEFQ DESSIQRKPR SENANRSKEC WFCLSSPSVE
301: SHLIVSVGES FYCALPKGSL VEDHILIIPI EHLPNTLVLS PEVESELSRY QNGLRNCYKS QGNDAVFFEL VSKRVSHANL QVVPVPSSRA RLLPNIFSLA
401: AEKLGFKLVT KKFNDSTDGR KYLQKEYNAA LGLFYVELPD GTVLSHTLEE NEVFPAQFGR EVLAGLLKIP DRADWRNCKI SQEEEAKLAE DFKKQFQEFD
501: PCQ
Arabidopsis Description
Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.