CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05530_001	Banana	cytosol, extracellular, mitochondrion, nucleus	18.85	3.81
Zm00001d020242_P002	Maize	plastid	17.21	3.64
TraesCS5A01G192000.1	Wheat	plastid	18.03	3.62
TraesCS5B01G191100.1	Wheat	plastid	18.03	3.62
TraesCS5D01G198900.1	Wheat	plastid	18.03	3.62
Os09t0364000-01	Rice	plastid	18.03	3.59
KXG35490	Sorghum	plastid	17.21	3.46
CDY32752	Canola	mitochondrion	15.57	3.26
HORVU5Hr1G057610.14	Barley	plastid	17.21	3.25
CDY32895	Canola	mitochondrion	14.75	3.03
CDY41723	Canola	nucleus	14.75	2.68
CDY33859	Canola	cytosol	2.46	2.54
CDY53572	Canola	nucleus	13.93	2.54
CDX80571	Canola	extracellular	0.82	0.44

Protein Annotations

Gene3D:3.40.50.620	MapMan:35.2	GO:A0A078J4J4	UniProt:A0A078J4J4	EnsemblPlants:CDY61116	ProteinID:CDY61116
ProteinID:CDY61116.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016874	GO:GO:0019538	GO:GO:0043039	EnsemblPlantsGene:GSBRNA2T00030597001	InterPro:Glu/Gln-tRNA-synth_Ib_cat-dom
InterPro:IPR014729	PFAM:PF00749	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52374	UniParc:UPI0004EEDFCC	SEG:seg

Description

BnaA06g39480DBnaA06g39480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4J4]

Coordinates

chrLK033957:+:30165..30709

Molecular Weight (calculated)

13907.6 Da

IEP (calculated)

10.021

GRAVY (calculated)

-0.622

Length

122 amino acids

Sequence
(BLAST)

001: MSRDYAEPLN KVATYTTIVK ECSSGKPVVV AAAAPPRSKD QERALKPVRK VRLATFNYLQ FAPEPSGYLH MGHAEAKVLN KYFNGAVNTY FAERCDTFQR
101: IYLSRKNRAY EEQGKLLRQE TT

Best Arabidopsis Sequence Match ( AT5G26710.1 )
(BLAST)

001: MDGMKLSFPP ESPPLSVIVA LSLSASPVTI DSSAAATTVP SFVFSDGRKL NGATVLLRYV GRSAKKLPDF YGNNAFDSSQ IDEWVDYASV FSSGSEFENA
101: CGRVDKYLES STFLVGHSLS IADVAIWSAL AGTGQRWESL RKSKKYQSLV RWFNSILDEY SEVLNKVLAT YVKKGSGKPV AAPKSKDSQQ AVKGDGQDKG
201: KPEVDLPEAE IGKVKLRFAP EPSGYLHIGH AKAALLNKYF AERYQGEVIV RFDDTNPAKE SNEFVDNLVK DIGTLGIKYE KVTYTSDYFP ELMDMAEKLM
301: REGKAYVDDT PREQMQKERM DGIDSKCRNH SVEENLKLWK EMIAGSERGL QCCVRGKFNM QDPNKAMRDP VYYRCNPMSH HRIGDKYKIY PTYDFACPFV
401: DSLEGITHAL RSSEYHDRNA QYFKVLEDMG LRQVQLYEFS RLNLVFTLLS KRKLLWFVQT GLVDGWDDPR FPTVQGIVRR GLKIEALIQF ILEQGASKNL
501: NLMEWDKLWS INKRIIDPVC PRHTAVVAER RVLFTLTDGP DEPFVRMIPK HKKFEGAGEK ATTFTKSIWL EEADASAISV GEEVTLMDWG NAIVKEITKD
601: EEGRVTALSG VLNLQGSVKT TKLKLTWLPD TNELVNLTLT EFDYLITKKK LEDDDEVADF VNPNTKKETL ALGDSNMRNL KCGDVIQLER KGYFRCDVPF
701: VKSSKPIVLF SIPDGRAAK

Arabidopsis Description

Glutamate--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:O82462]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.