CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80571	Canola	extracellular	61.86	32.02
CDY32895	Canola	mitochondrion	87.29	17.31
CDY32752	Canola	mitochondrion	72.03	14.6
AT5G56900.2	Thale cress	mitochondrion	72.03	14.26
KRH02709	Soybean	nucleus	62.71	13.7
KRH19176	Soybean	mitochondrion	61.86	12.15
PGSC0003DMT400000758	Potato	cytosol, extracellular, mitochondrion, nucleus	58.47	11.58
VIT_11s0016g02130.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	57.63	11.47
Solyc12g008890.1.1	Tomato	nucleus	11.86	11.11
GSMUA_Achr8P05530_001	Banana	cytosol, extracellular, mitochondrion, nucleus	54.24	10.6
KXG35490	Sorghum	plastid	52.54	10.21
TraesCS5B01G191100.1	Wheat	plastid	52.54	10.2
TraesCS5D01G198900.1	Wheat	plastid	52.54	10.2
Os09t0364000-01	Rice	plastid	52.54	10.11
TraesCS5A01G192000.1	Wheat	plastid	51.69	10.03
HORVU5Hr1G057610.14	Barley	plastid	51.69	9.44
Zm00001d020242_P002	Maize	plastid	45.76	9.36
CDY61116	Canola	cytosol	2.54	2.46
CDY53572	Canola	nucleus	12.71	2.24
CDY41723	Canola	nucleus	12.71	2.23
Solyc05g032650.1.1	Tomato	extracellular, golgi	0.0	0.0
Solyc12g008870.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY33859	EnsemblPlantsGene:GSBRNA2T00055337001	PANTHER:PTHR12072	PANTHER:PTHR12072:SF4	ProteinID:CDY33859	ProteinID:CDY33859.1
SEG:seg	UniParc:UPI0004EE7707	UniProt:A0A078H8P0	MapMan:15.5.16	:	:

Description

BnaC06g04940DBnaC06g04940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8P0]

Coordinates

chrLK032323:+:125369..126043

Molecular Weight (calculated)

12599.5 Da

IEP (calculated)

4.369

GRAVY (calculated)

-0.167

Length

118 amino acids

Sequence
(BLAST)

001: MDGLVVAHNL FWLRGSGKFT LHGLSVAYLS GTESSDGQFG KYSQDDVDAL RALADDSGVV DFLFTNEWHV GATNRAAESD NPAEVSDSSC CDSNVSELVK
101: EVKPRYHIAG SMGGVLCP

Best Arabidopsis Sequence Match ( AT5G56900.2 )
(BLAST)

001: MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.