Factsheet for Solyc05g032650.1.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008870.1.1	Tomato	nucleus	41.58	33.82
PGSC0003DMT400000758	Potato	cytosol, extracellular, mitochondrion, nucleus	65.23	30.54
KRH02709	Soybean	nucleus	50.9	26.3
Solyc12g008890.1.1	Tomato	nucleus	11.47	25.4
VIT_11s0016g02130.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	51.25	24.11
KRH19176	Soybean	mitochondrion	50.9	23.63
CDY32752	Canola	mitochondrion	47.67	22.85
CDY32895	Canola	mitochondrion	48.03	22.52
Bra002785.1-P	Field mustard	mitochondrion, plastid	48.03	22.19
GSMUA_Achr8P05530_001	Banana	cytosol, extracellular, mitochondrion, nucleus	48.03	22.19
Zm00001d020242_P002	Maize	plastid	45.88	22.18
AT5G56900.2	Thale cress	mitochondrion	46.59	21.81
KXG35490	Sorghum	plastid	46.24	21.25
TraesCS5A01G192000.1	Wheat	plastid	46.24	21.22
TraesCS5B01G191100.1	Wheat	plastid	45.88	21.05
TraesCS5D01G198900.1	Wheat	plastid	45.88	21.05
Os09t0364000-01	Rice	plastid	46.24	21.04
HORVU5Hr1G057610.14	Barley	plastid	46.59	20.12
Solyc09g083420.2.1	Tomato	nucleus	14.34	5.17
CDY33859	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc05g032650.1.1	EnsemblPlantsGene:Solyc05g032650.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:Cwf19-like_C_dom-1
InterPro:IPR000571	InterPro:Znf_CCCH	ncoils:Coil	PANTHER:PTHR12072	PANTHER:PTHR12072:SF4	PFAM:PF04677
PFscan:PS50103	UniParc:UPI00027660B6	UniProt:K4C046	MapMan:15.5.16	:	:

Description

No Description!

Coordinates

chr5:+:46393475..46394899

Molecular Weight (calculated)

31786.4 Da

IEP (calculated)

8.903

GRAVY (calculated)

-0.284

Length

279 amino acids

Sequence
(BLAST)

001: MAHLRILLCG DLIIRLNKLF KRVSLVNKAA GPFDAILCVR TIGVYFDRKP YAKVDALHVT RFLGFAPVRN NDKQKFIHAI SPTPALTMSK TEFSAKPPIT
101: TSCPYANVDK AYQRYDVSKK KQKHEDSGGD ILCFKFYSSS SCPRGNQCHL RHDEELQNNT QEVCVLTFLT RENVKKVLMK LQAQLARFSD QHLGHSNVES
201: HLITSVGEYY YCALAKGSLA PEHVLIMPIE HTPNTLSLPL ECENELEQLQ SSLKHYFKKQ GNEAIFYEFV FMRGSHVNF

Best Arabidopsis Sequence Match ( AT5G56900.3 )
(BLAST)

001: MDGLEVCHNL FWLRGSGKFS LHGLSVAYLS GRQSSESQFG KYSQDDVDAL RALAEEPGGV DLFLTNEWPA GVTNRAAVSD IPVGISDSSC SDSTVSELVM
101: EVKPRYHIAG SMGVFYAREP YLNAESTHVT RFIGLAQVGN KNKQKFLHAL SPTPTSTMSP AELSAKPPKT TLWPYNLQDG AAESKKRPND SDSDSQYWRY
201: DVPKRQKSGS QGEKLCFKFV CSGSCPRGED CHFQHNAEAR EQCRRGVCLD LIIKGKCEKG PECSYKHEFQ DESSIQRKPR SENANRSKEC WFCLSSPSVE
301: SHLIVSVGES FYCALPKGSL VEDHILIIPI EHLPNTLVLS PEVESELSRY QNGLRNCYKS QGNDAVFFEL VSKRVSHANL QVVPVPSSRA RLLPNIFSLA
401: AEKLGFKLVT KKFNDSTDGR KYLQKEYNAA LGLFYVELPD GTVLSHTLEE NEVFPAQFGR EVLAGLLKIP DRADWRNCKI SQEEEAKLAE DFKKQFQEFD
501: PCQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.