Factsheet for VIT_11s0016g02130.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:

plastid 4
extracellular 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008890.1.1	Tomato	nucleus	14.84	69.84
KRH19176	Soybean	mitochondrion	70.66	69.72
PGSC0003DMT400000758	Potato	cytosol, extracellular, mitochondrion, nucleus	69.98	69.63
KRH02709	Soybean	nucleus	61.38	67.41
Solyc12g008870.1.1	Tomato	nucleus	38.79	67.06
GSMUA_Achr8P05530_001	Banana	cytosol, extracellular, mitochondrion, nucleus	64.92	63.74
CDY32752	Canola	mitochondrion	62.06	63.23
AT5G56900.2	Thale cress	mitochondrion	63.41	63.09
CDY32895	Canola	mitochondrion	63.07	62.86
Bra002785.1-P	Field mustard	mitochondrion, plastid	62.39	61.26
Zm00001d020242_P002	Maize	plastid	57.67	59.27
KXG35490	Sorghum	plastid	60.37	58.98
TraesCS5D01G198900.1	Wheat	plastid	59.53	58.06
TraesCS5A01G192000.1	Wheat	plastid	59.36	57.89
TraesCS5B01G191100.1	Wheat	plastid	59.36	57.89
CDY33859	Canola	cytosol	11.47	57.63
Os09t0364000-01	Rice	plastid	59.19	57.26
HORVU5Hr1G057610.14	Barley	plastid	59.36	54.49
Solyc05g032650.1.1	Tomato	extracellular, golgi	24.11	51.25
VIT_05s0020g04950.t01	Wine grape	nucleus	14.84	10.86

Protein Annotations

EntrezGene:100259266	wikigene:100259266	MapMan:15.5.16	Gene3D:3.30.428.10	Gene3D:4.10.1000.10	ProteinID:CBI27906
ProteinID:CBI27906.3	InterPro:Cwf19-like_C_dom-1	InterPro:Cwf19-like_C_dom-2	UniProt:D7TB71	EMBL:FN595756	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:HIT-like_sf	InterPro:IPR000571	InterPro:IPR036265	EntrezGene:LOC100259266
wikigene:LOC100259266	PFAM:PF00642	PFAM:PF04676	PFAM:PF04677	PFscan:PS50103	PANTHER:PTHR12072
PANTHER:PTHR12072:SF4	SMART:SM00356	SUPFAM:SSF54197	SUPFAM:SSF90229	TIGR:TC57279	UniParc:UPI0001BE2F43
ArrayExpress:VIT_11s0016g02130	EnsemblPlantsGene:VIT_11s0016g02130	EnsemblPlants:VIT_11s0016g02130.t01	RefSeq:XP_002279554	RefSeq:XP_002279554.2	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:1733904..1755869

Molecular Weight (calculated)

66170.7 Da

IEP (calculated)

7.764

GRAVY (calculated)

-0.383

Length

593 amino acids

Sequence
(BLAST)

001: MAPPRILLCG DVLGRLNQLV KRILSVNKSA GPFDAVLCVG QFFPDSPERL LEFMDYIEGR SQIPLPTYFI GDYGIGAAKV LSAASKDSAN LGFKMDGLRI
101: CDNLYWLKGS GKFTLHGLSV VYISGRRSLD GQQFGKYSQD DVDALRALAD DGVTKGAVTS NIPPGISDSS GCDSAISELV GEIKPRYHIA GTKGIFYDRE
201: PYSNLDAVHV TRFLGLAPVG NKDKQKFIHA ISPIPASTMS SAEISMKPPN TTLFPYKIIE ETAPTNQATK RPSDSISDTQ YWRYDVSQKR QKHGAGDGDK
301: LCFKFVSSGS CPRGNKCNFL HDTEAREQYM RGVCFDFINK GKCERGPDCN FKHSLQDEDE GFASRRSGSE NAKSSRSKRC WFCLSSPDVE SHLIISIGES
401: YYCALAKGPL VEDQVLVIPV EHSANTLSLP PECEIELDRF QKSLKMYFRT QGKEVVFFEW IFKRGTHANI QAVPIPLSRA SAVKNIFILA AEKLGFQFVT
501: TKSNNDSEGR KSLRAQFDDK ISFFYVELPD GTILSHAIED NEKFPVQFGR EVLAGLLNMA DRADWRNCKQ SKEDEMKMAE VFKNQFKKFD PYQ

Best Arabidopsis Sequence Match ( AT5G56900.2 )
(BLAST)

001: MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC
101: HNLFWLRGSG KFSLHGLSVA YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD SSCSDSTVSE LVMEVKPRYH
201: IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
301: SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV
401: GESFYCALPK GSLVEDHILI IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS SRARLLPNIF SLAAEKLGFK
501: LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 64 [Source:UniProtKB/Swiss-Prot;Acc:Q84WU9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.