Factsheet for Solyc04g078310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007740.2.1
Solyc01g081640.2.1
Solyc01g089970.2.1
Solyc01g097050.2.1
Solyc01g103050.2.1
Solyc01g111080.2.1
Solyc01g111170.2.1
Solyc02g063070.2.1
Solyc02g067460.2.1
Solyc02g081170.2.1
Solyc02g093900.2.1
Solyc03g031460.1.1
Solyc03g034180.2.1
Solyc03g058920.2.1
Solyc03g082600.2.1
Solyc03g110910.2.1
Solyc04g073990.2.1
Solyc04g074230.2.1
Solyc04g081580.2.1
Solyc05g053650.2.1
Solyc05g055730.2.1
Solyc06g066060.2.1
Solyc07g052350.2.1
Solyc07g056490.2.1
Solyc08g022210.2.1
Solyc08g061000.2.1
Solyc08g066330.1.1
Solyc09g055420.1.1
Solyc09g091750.2.1
Solyc09g091780.2.1	nucleus
Solyc10g054910.1.1
Solyc10g082030.1.1
Solyc11g008870.1.1
Solyc12g005860.1.1
Solyc12g011310.1.1
Solyc12g098310.1.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47220.1	Solyc05g053650.2.1	AT1G04810.1	20706207
AT1G47220.1	Solyc09g091750.2.1	AT1G04810.1	20706207
AT1G47220.1	Solyc04g074230.2.1	AT1G22300.1	20706207
AT1G47220.1	Solyc04g073990.2.1	AT1G35720.1	20706207
AT1G47220.1	Solyc01g103050.2.1	AT1G59750.1	20706207
AT1G47220.1	Solyc01g111080.2.1	AT1G75750.1	20706207
AT1G47220.1	Solyc07g056490.2.1	AT1G78380.1	20706207
AT1G47220.1	Solyc12g011310.1.1	AT1G78380.1	20706207
AT1G47220.1	Solyc07g052350.2.1	AT2G05710.1	20706207
AT1G47220.1	Solyc12g005860.1.1	AT2G05710.1	20706207
AT1G47220.1	Solyc05g055730.2.1	AT2G44160.1	20706207
AT1G47220.1	Solyc11g008870.1.1	AT2G44160.1	20706207
AT1G47220.1	Solyc02g067460.2.1	AT3G01280.1	20706207
AT1G47220.1	Solyc03g058920.2.1	AT3G01280.1	20706207
AT1G47220.1	Solyc01g007740.2.1	AT3G11630.1	20706207
AT1G47220.1	Solyc10g082030.1.1	AT3G11630.1	20706207
AT1G47220.1	Solyc02g093900.2.1	AT3G27240.1	20706207
AT1G47220.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT1G47220.1	Solyc01g089970.2.1	AT4G09320.1	20706207
AT1G47220.1	Solyc09g055420.1.1	AT4G09320.1	20706207
AT1G47220.1	Solyc01g111170.2.1	AT4G38740.1	20706207
AT1G47220.1	Solyc10g054910.1.1	AT4G38740.1	20706207
AT1G47220.1	Solyc06g066060.2.1	AT5G11170.1	20706207
AT1G47220.1	Solyc08g061000.2.1	AT5G11170.1	20706207
AT1G47220.1	Solyc02g063070.2.1	AT5G38480.1	20706207
AT1G47220.1	Solyc03g034180.2.1	AT5G38480.1	20706207
AT1G47220.1	Solyc03g082600.2.1	AT5G53560.1	20706207
AT5G43080.1	Solyc03g031460.1.1	AT1G55890.1	20706207
AT5G43080.1	Solyc08g022210.2.1	AT2G05830.1	20706207
AT5G43080.1	Solyc01g081640.2.1	AT2G31920.1	20706207
AT5G43080.1	Solyc09g091780.2.1	AT2G32710.1	20018602
AT5G43080.1	Solyc12g098310.1.1	AT2G32710.1	20018602
AT5G43080.1	Solyc01g097050.2.1	AT3G04620.1	20706207
AT5G43080.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT5G43080.1	Solyc02g081170.2.1	AT4G04020.1	20706207
AT5G43080.1	Solyc04g081580.2.1	AT4G16630.1	20706207
AT5G43080.1	Solyc03g110910.2.1	AT5G50320.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055428	Potato	nucleus	94.88	95.65
Solyc12g088530.1.1	Tomato	nucleus	70.35	73.73
Solyc12g088470.1.1	Tomato	nucleus	70.62	72.78
Solyc12g088520.1.1	Tomato	nucleus	69.27	72.39
Solyc12g088500.1.1	Tomato	nucleus	68.19	71.47
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	69.27	70.41
KRH52056	Soybean	nucleus	37.74	66.35
OQU91386	Sorghum	nucleus	46.09	65.52
CDY06752	Canola	nucleus	49.33	64.21
GSMUA_Achr10P...	Banana	nucleus	52.83	61.83
CDY22369	Canola	nucleus	58.49	61.82
Bra033658.1-P	Field mustard	nucleus	57.68	60.11
CDY66770	Canola	nucleus	58.49	59.94
KRH15427	Soybean	nucleus, plastid	58.76	59.89
CDY17091	Canola	nucleus	57.68	59.78
CDY06757	Canola	nucleus, plastid	57.68	58.95
Bra040753.1-P	Field mustard	nucleus, plastid	57.68	58.95
AT5G43080.1	Thale cress	nucleus	56.33	58.87
KRH05614	Soybean	nucleus	57.95	58.58
TraesCS4D01G076900.1	Wheat	nucleus	58.22	58.38
CDY17037	Canola	nucleus, plastid	57.14	58.24
KRH61375	Soybean	nucleus	50.94	57.8
TraesCS4B01G078300.1	Wheat	nucleus	57.68	57.68
Bra032220.1-P	Field mustard	nucleus	55.26	57.42
Bra040792.1-P	Field mustard	nucleus, plastid	56.33	57.42
CDY47595	Canola	nucleus, plastid	57.41	57.41
Bra040710.1-P	Field mustard	nucleus	57.41	57.41
Bra040793.1-P	Field mustard	nucleus	56.06	57.3
CDY47596	Canola	nucleus	56.06	57.3
CDY23653	Canola	nucleus	54.99	57.14
AT1G47230.2	Thale cress	nucleus, plastid	56.87	57.03
CDY17039	Canola	nucleus	55.8	57.02
HORVU4Hr1G013320.1	Barley	nucleus	57.14	56.84
TraesCS4A01G236700.2	Wheat	plastid	57.41	56.8
AT1G47210.2	Thale cress	nucleus	56.87	56.72
GSMUA_Achr2P21530_001	Banana	cytosol, nucleus, plastid	43.13	55.94
KRH61369	Soybean	nucleus	48.79	55.35
KRH52055	Soybean	nucleus	52.83	54.75
Zm00001d033365_P002	Maize	nucleus	54.45	54.3
KRH61371	Soybean	nucleus	50.94	54.15
GSMUA_Achr6P11130_001	Banana	nucleus	56.87	53.96
AT1G47220.1	Thale cress	nucleus	47.17	53.52
TraesCS5B01G078200.1	Wheat	plastid	53.64	52.79
Zm00001d013744_P001	Maize	nucleus	50.67	52.66
TraesCS5A01G072000.1	Wheat	plastid	52.83	52.13
TraesCS5D01G084700.1	Wheat	nucleus	52.83	51.85
KRH61373	Soybean	nucleus, plastid	51.75	51.2
Os12t0581800-01	Rice	nucleus, plastid	52.83	50.91
GSMUA_Achr2P21520_001	Banana	nucleus	49.33	50.83
Solyc10g049360.1.1	Tomato	nucleus	51.48	50.53
Zm00001d030849_P001	Maize	nucleus	56.6	49.65
EES16237	Sorghum	nucleus, plastid	56.33	48.83
TraesCS4D01G253200.1	Wheat	nucleus	30.73	46.72
Zm00001d041334_P001	Maize	nucleus, plastid	54.45	46.22
HORVU5Hr1G018820.2	Barley	nucleus, plastid	52.83	43.17
TraesCS4B01G254000.1	Wheat	nucleus	42.86	42.29
TraesCS4A01G050700.1	Wheat	nucleus	41.78	40.79
EER95303	Sorghum	nucleus, plastid	41.78	40.68
TraesCS4D01G253900.1	Wheat	nucleus	41.51	40.53
TraesCS4A01G051300.1	Wheat	nucleus	36.66	39.65
TraesCS4B01G253100.1	Wheat	nucleus	36.12	39.3
HORVU4Hr1G069310.3	Barley	nucleus	42.05	37.59
Solyc06g065680.2.1	Tomato	nucleus, plastid	46.36	36.21
Solyc03g120440.1.1	Tomato	nucleus, plastid	42.59	34.5
Solyc11g005090.1.1	Tomato	plastid	43.94	33.27
Os03t0607600-00	Rice	nucleus	51.75	31.58
Solyc02g061650.1.1	Tomato	nucleus	28.03	29.63
Os03t0208700-00	Rice	nucleus	32.61	29.58
Zm00001d048127_P001	Maize	plastid	37.47	29.02
Solyc04g082430.2.1	Tomato	nucleus	29.11	27.48
Solyc03g032190.2.1	Tomato	nucleus	31.0	26.68
Solyc02g082820.2.1	Tomato	nucleus	30.73	26.27
Solyc12g094600.1.1	Tomato	nucleus	29.65	25.88
Solyc10g078330.1.1	Tomato	nucleus	28.84	25.3
Solyc01g009040.2.1	Tomato	nucleus	29.65	25.29
Solyc06g073610.2.1	Tomato	nucleus	29.92	25.23
Solyc10g080950.1.1	Tomato	nucleus	28.57	22.94
Os03t0208800-00	Rice	nucleus	16.71	15.62
Solyc07g066660.2.1	Tomato	nucleus	25.07	12.58

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	InterPro:Cyclin-A_plant	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:K4BUR8
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF270
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc04g078310.2	EnsemblPlants:Solyc04g078310.2.1	UniParc:UPI0002766A2E
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:63067246..63069126

Molecular Weight (calculated)

42365.3 Da

IEP (calculated)

8.233

GRAVY (calculated)

-0.259

Length

371 amino acids

Sequence
(BLAST)

001: MVDSENCGRV TRLAKKRAAE GMAPQEQRRA SKKRVVLGEI QNFSIVGVKQ IKGVEGKIQK PKSKKKVKRV VASKTVEEKE VSVVVVDDDD VDDPQMCTAY
101: VSDIYDYLRK MEIDEKRRPL PDYLEKVQKD VSATMRGILV DWLVEVSEEY KLLSDTLYLT VSYLDRFLST NVITRQKLQL LGVSSMLIAA KYEEISPPHV
201: EDFCYITDNT YTKEEVVKME ADVLNSLQFE MGNPTVKTFL RRFTGIAQEE YKTPNLQLEF LGYYLSELGL LDYCCVKFLP SLVAASVIFL SRFTLQPNAH
301: PWSAALQRYS GYKASDLKEC VLILHDLQLS RRGGSLVAVR DKYKQHKFKC VSTLTSLVEI PASFFEDTRQ L

Best Arabidopsis Sequence Match ( AT1G47230.1 )
(BLAST)

001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA

Arabidopsis Description

CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.