Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013744_P001 | Maize | nucleus | 76.61 | 79.83 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 74.19 | 74.59 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 74.73 | 74.53 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 74.19 | 74.39 |
| TraesCS4A01G236700.2 | Wheat | plastid | 74.46 | 73.87 |
| GSMUA_Achr10P... | Banana | nucleus | 54.3 | 63.72 |
| KRH52056 | Soybean | nucleus | 33.87 | 59.72 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 57.8 | 58.9 |
| CDY06752 | Canola | nucleus | 44.89 | 58.6 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 61.29 | 58.31 |
| CDY22369 | Canola | nucleus | 52.15 | 55.27 |
| AT5G43080.1 | Thale cress | nucleus | 52.42 | 54.93 |
| Solyc04g078310.2.1 | Tomato | nucleus | 54.3 | 54.45 |
| Zm00001d030849_P001 | Maize | nucleus | 61.83 | 54.37 |
| Bra033658.1-P | Field mustard | nucleus | 51.88 | 54.21 |
| PGSC0003DMT400055428 | Potato | nucleus | 53.49 | 54.08 |
| Solyc12g088530.1.1 | Tomato | nucleus | 51.08 | 53.67 |
| PGSC0003DMT400030176 | Potato | nucleus | 51.08 | 53.37 |
| PGSC0003DMT400030222 | Potato | nucleus | 50.54 | 53.11 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 62.1 | 52.86 |
| KRH15427 | Soybean | nucleus, plastid | 51.34 | 52.47 |
| Solyc12g088500.1.1 | Tomato | nucleus | 49.73 | 52.26 |
| CDY17091 | Canola | nucleus | 50.27 | 52.23 |
| Solyc12g088520.1.1 | Tomato | nucleus | 49.73 | 52.11 |
| CDY66770 | Canola | nucleus | 50.54 | 51.93 |
| CDY17037 | Canola | nucleus, plastid | 50.54 | 51.65 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 51.34 | 51.62 |
| Solyc12g088470.1.1 | Tomato | nucleus | 49.73 | 51.39 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 50.0 | 51.1 |
| Bra032220.1-P | Field mustard | nucleus | 48.92 | 50.98 |
| CDY47595 | Canola | nucleus, plastid | 50.81 | 50.94 |
| AT1G47220.1 | Thale cress | nucleus | 44.62 | 50.76 |
| KRH61375 | Soybean | nucleus | 44.62 | 50.76 |
| CDY23653 | Canola | nucleus | 48.66 | 50.7 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 49.46 | 50.69 |
| CDY06757 | Canola | nucleus, plastid | 49.46 | 50.69 |
| KRH05614 | Soybean | nucleus | 50.0 | 50.68 |
| Bra040710.1-P | Field mustard | nucleus | 50.27 | 50.4 |
| KRH61369 | Soybean | nucleus | 44.09 | 50.15 |
| Bra040793.1-P | Field mustard | nucleus | 48.92 | 50.14 |
| CDY47596 | Canola | nucleus | 48.92 | 50.14 |
| CDY17039 | Canola | nucleus | 48.66 | 49.86 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 45.7 | 49.85 |
| AT1G47210.2 | Thale cress | nucleus | 49.73 | 49.73 |
| KRH61371 | Soybean | nucleus | 46.51 | 49.57 |
| KRH52055 | Soybean | nucleus | 47.58 | 49.44 |
| PGSC0003DMT400056625 | Potato | nucleus | 47.31 | 46.32 |
| Solyc10g049360.1.1 | Tomato | nucleus | 47.04 | 46.3 |
| KRH61373 | Soybean | nucleus, plastid | 45.97 | 45.6 |
| Os03t0607600-00 | Rice | nucleus | 64.25 | 39.31 |
| Zm00001d032128_P001 | Maize | cytosol | 16.4 | 38.61 |
| Zm00001d019469_P001 | Maize | extracellular | 14.52 | 37.76 |
| Zm00001d040381_P001 | Maize | plastid | 46.51 | 32.46 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 16.67 | 31.0 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 43.28 | 30.9 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 39.25 | 30.1 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 40.32 | 29.41 |
| Zm00001d048127_P001 | Maize | plastid | 36.56 | 28.39 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 32.26 | 26.73 |
| Zm00001d010404_P001 | Maize | nucleus | 34.68 | 26.6 |
| Zm00001d036360_P002 | Maize | nucleus | 28.23 | 24.76 |
| Zm00001d043164_P002 | Maize | nucleus | 31.72 | 24.38 |
| Zm00001d010656_P001 | Maize | nucleus | 28.23 | 23.54 |
| Zm00001d026129_P001 | Maize | nucleus | 26.34 | 23.0 |
| Zm00001d002662_P010 | Maize | nucleus | 27.15 | 22.2 |
| Zm00001d008221_P001 | Maize | nucleus | 27.15 | 21.09 |
| Zm00001d020033_P001 | Maize | nucleus | 27.42 | 18.75 |
| Zm00001d020996_P001 | Maize | nucleus | 26.88 | 18.38 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:100280053 | MapMan:13.1.1.1.1 | UniProt:B8A1M4 | EMBL:BT055466 | InterPro:Cyclin-like |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | ProteinID:ONM07410.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF345 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00019176CD |
| EnsemblPlantsGene:Zm00001d033365 | EnsemblPlants:Zm00001d033365_P002 | EnsemblPlants:Zm00001d033365_T002 | SEG:seg | : | : |
Description
Putative cyclin-A3-1
Coordinates
chr1:-:260370386..260372454
Molecular Weight (calculated)
41385.0 Da
IEP (calculated)
9.381
GRAVY (calculated)
-0.187
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSAAAAAE RPRLTRAAAK RSAVVTAVAV AAKRKRVALS QLPTLPNAVL GAHDDDDDKP VRKQRLLPAA KPKPKPKAAP APAAPAAADD TDDDIQLCKP
101: YASDIYSYLR SMESQAKRRL AVDYIAAVQI DVTPNMRGIL IDWLVEVAEE YKLVSDTLYL TVSYIDRFLS AKVLNRQKLQ LLGVSAMLIA SKYEEISPPN
201: VEDFCYITDN TYTKQEVVKM ESDILNVLKF EVGSPTAKTF LRMFIRSAQE DNKKYPSLQL EFLGSYLSEL SLLDYGLIRS LPSLVAASAV FVARLTLDPH
301: THPWSKKVQT LTGYKPSELK DCVAAIHNLQ LNRTCQSMVA IREKYRQHRF KGVSALLPPV EIPASYFNTL KE
101: YASDIYSYLR SMESQAKRRL AVDYIAAVQI DVTPNMRGIL IDWLVEVAEE YKLVSDTLYL TVSYIDRFLS AKVLNRQKLQ LLGVSAMLIA SKYEEISPPN
201: VEDFCYITDN TYTKQEVVKM ESDILNVLKF EVGSPTAKTF LRMFIRSAQE DNKKYPSLQL EFLGSYLSEL SLLDYGLIRS LPSLVAASAV FVARLTLDPH
301: THPWSKKVQT LTGYKPSELK DCVAAIHNLQ LNRTCQSMVA IREKYRQHRF KGVSALLPPV EIPASYFNTL KE
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.