Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61369 | Soybean | nucleus | 81.28 | 88.99 |
| KRH52056 | Soybean | nucleus | 48.04 | 81.52 |
| KRH61371 | Soybean | nucleus | 74.3 | 76.22 |
| KRH61373 | Soybean | nucleus, plastid | 78.49 | 74.93 |
| KRH61375 | Soybean | nucleus | 57.82 | 63.3 |
| OQU91386 | Sorghum | nucleus | 42.74 | 58.62 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 57.54 | 56.44 |
| CDY06752 | Canola | nucleus | 44.41 | 55.79 |
| AT5G43080.1 | Thale cress | nucleus | 54.47 | 54.93 |
| CDY22369 | Canola | nucleus | 53.63 | 54.7 |
| GSMUA_Achr10P... | Banana | nucleus | 47.77 | 53.94 |
| PGSC0003DMT400030222 | Potato | nucleus | 52.79 | 53.39 |
| PGSC0003DMT400030176 | Potato | nucleus | 53.07 | 53.37 |
| Bra033658.1-P | Field mustard | nucleus | 53.07 | 53.37 |
| Solyc04g078310.2.1 | Tomato | nucleus | 54.75 | 52.83 |
| PGSC0003DMT400055428 | Potato | nucleus | 54.19 | 52.72 |
| Bra032220.1-P | Field mustard | nucleus | 52.51 | 52.66 |
| Solyc12g088500.1.1 | Tomato | nucleus | 51.96 | 52.54 |
| Solyc12g088530.1.1 | Tomato | nucleus | 51.96 | 52.54 |
| Solyc12g088470.1.1 | Tomato | nucleus | 52.79 | 52.5 |
| CDY66770 | Canola | nucleus | 53.07 | 52.49 |
| CDY23653 | Canola | nucleus | 52.23 | 52.38 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 52.79 | 52.07 |
| CDY06757 | Canola | nucleus, plastid | 52.51 | 51.79 |
| CDY17039 | Canola | nucleus | 51.96 | 51.24 |
| CDY47596 | Canola | nucleus | 51.96 | 51.24 |
| Bra040793.1-P | Field mustard | nucleus | 51.96 | 51.24 |
| CDY17091 | Canola | nucleus | 51.12 | 51.12 |
| KRH15427 | Soybean | nucleus, plastid | 51.96 | 51.1 |
| Solyc12g088520.1.1 | Tomato | nucleus | 50.56 | 50.99 |
| KRH05614 | Soybean | nucleus | 51.96 | 50.68 |
| CDY17037 | Canola | nucleus, plastid | 51.4 | 50.55 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 52.23 | 50.54 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 52.23 | 50.54 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 50.84 | 50.0 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 51.68 | 49.6 |
| Bra040710.1-P | Field mustard | nucleus | 51.4 | 49.6 |
| CDY47595 | Canola | nucleus, plastid | 51.4 | 49.6 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 51.4 | 49.6 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 53.63 | 49.1 |
| TraesCS4A01G236700.2 | Wheat | plastid | 51.4 | 49.07 |
| AT1G47210.2 | Thale cress | nucleus | 50.84 | 48.92 |
| AT1G47220.1 | Thale cress | nucleus | 44.13 | 48.32 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 38.55 | 48.25 |
| Zm00001d033365_P002 | Maize | nucleus | 49.44 | 47.58 |
| Zm00001d013744_P001 | Maize | nucleus | 46.93 | 47.06 |
| TraesCS5A01G072000.1 | Wheat | plastid | 48.88 | 46.54 |
| Os12t0581800-01 | Rice | nucleus, plastid | 50.0 | 46.49 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 48.88 | 46.3 |
| TraesCS5B01G078200.1 | Wheat | plastid | 48.6 | 46.15 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 30.73 | 45.08 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 44.69 | 44.44 |
| EES16237 | Sorghum | nucleus, plastid | 52.51 | 43.93 |
| Zm00001d030849_P001 | Maize | nucleus | 51.68 | 43.74 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 50.56 | 41.42 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 41.62 | 39.63 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 48.88 | 38.55 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 40.5 | 38.16 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 40.22 | 37.89 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 35.75 | 37.32 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 35.47 | 37.24 |
| EER95303 | Sorghum | nucleus, plastid | 38.83 | 36.48 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 40.22 | 34.7 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 18.44 | 33.17 |
| KRH53279 | Soybean | plastid | 42.74 | 31.88 |
| KRH64625 | Soybean | plastid | 42.74 | 31.61 |
| KRH52524 | Soybean | nucleus | 40.5 | 30.92 |
| KRH16044 | Soybean | nucleus | 39.66 | 30.8 |
| KRH47513 | Soybean | nucleus | 39.94 | 30.04 |
| KRH17986 | Soybean | plastid | 41.62 | 29.62 |
| KRH16410 | Soybean | plastid | 41.62 | 29.56 |
| KRH05060 | Soybean | nucleus | 37.71 | 29.41 |
| KRH61850 | Soybean | nucleus | 39.94 | 29.3 |
| KRH44391 | Soybean | nucleus | 37.15 | 28.24 |
| Os03t0607600-00 | Rice | nucleus | 47.21 | 27.8 |
| Zm00001d048127_P001 | Maize | plastid | 37.15 | 27.77 |
| Os03t0208700-00 | Rice | nucleus | 31.01 | 27.14 |
| KRH66715 | Soybean | nucleus | 26.54 | 24.23 |
| KRH14611 | Soybean | nucleus | 28.77 | 23.46 |
| KRH73516 | Soybean | nucleus | 28.77 | 23.41 |
| KRH51329 | Soybean | nucleus, plastid | 27.09 | 23.37 |
| KRH60628 | Soybean | nucleus | 26.26 | 23.21 |
| KRH66718 | Soybean | plastid | 23.74 | 22.79 |
| KRH76553 | Soybean | nucleus | 26.82 | 22.22 |
| KRH66713 | Soybean | nucleus | 27.65 | 21.81 |
| KRG95055 | Soybean | nucleus | 27.65 | 21.76 |
| KRH28901 | Soybean | nucleus | 26.26 | 21.71 |
| KRG95056 | Soybean | cytosol | 23.18 | 21.45 |
| Os03t0208800-00 | Rice | nucleus | 14.8 | 13.35 |
| KRH44849 | Soybean | nucleus | 24.58 | 11.88 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:100793436 | MapMan:13.1.1.1.1 | EMBL:ACUP02003404 | InterPro:Cyclin-A_plant | InterPro:Cyclin-like |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | EnsemblPlantsGene:GLYMA_06G043900 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | UniProt:I1K835 | EnsemblPlants:KRH52055 | ProteinID:KRH52055 | ProteinID:KRH52055.1 |
| PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF270 |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0002339D2E | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr6:+:3342749..3344943
Molecular Weight (calculated)
40968.5 Da
IEP (calculated)
7.629
GRAVY (calculated)
-0.291
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: METRAAAKRK ANAATIVFVE KQYPNKRQRV VLGELPNLQN LIVSETQNSR KEKLLCRKNP NEKKPSPTNN NTFPSPQINE SYDSDIHGYL REMEMQNKRR
101: PMVDYIEKVQ KIVTPTMRAI LVDWLVEVAV EYKLLSDTLH LSVSYIDRFL SVNPVSKSRL QLLGVSSMLI AAKYEEMDPP GVDEFCSITD HTYDKTEVVK
201: MEADILKSLK FEMGNPTVST FLRRYADVAS NDQKTPNLQI DFLGSYIGEL SLLDYDCLRF LPSIVAASVI FLAKFIICPE VHPWTSSLCE CSGYKPAELK
301: ECVLILHDLY LSRKAASFKA VRAKYKQQKF ECVANLPTPP YVPSCYFEDQ WCSEFLDK
101: PMVDYIEKVQ KIVTPTMRAI LVDWLVEVAV EYKLLSDTLH LSVSYIDRFL SVNPVSKSRL QLLGVSSMLI AAKYEEMDPP GVDEFCSITD HTYDKTEVVK
201: MEADILKSLK FEMGNPTVST FLRRYADVAS NDQKTPNLQI DFLGSYIGEL SLLDYDCLRF LPSIVAASVI FLAKFIICPE VHPWTSSLCE CSGYKPAELK
301: ECVLILHDLY LSRKAASFKA VRAKYKQQKF ECVANLPTPP YVPSCYFEDQ WCSEFLDK
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.