Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G253100.1 | Wheat | nucleus | 91.55 | 92.08 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 59.18 | 83.2 |
| EER95303 | Sorghum | nucleus, plastid | 53.94 | 48.56 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 52.77 | 47.63 |
| KRH52056 | Soybean | nucleus | 29.15 | 47.39 |
| CDY06752 | Canola | nucleus | 37.9 | 45.61 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 36.44 | 43.71 |
| AT1G47220.1 | Thale cress | nucleus | 37.32 | 39.14 |
| Solyc12g088530.1.1 | Tomato | nucleus | 40.23 | 38.98 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 40.52 | 38.08 |
| PGSC0003DMT400030176 | Potato | nucleus | 39.36 | 37.92 |
| CDY22369 | Canola | nucleus | 38.78 | 37.89 |
| Solyc12g088500.1.1 | Tomato | nucleus | 39.07 | 37.85 |
| PGSC0003DMT400030222 | Potato | nucleus | 39.07 | 37.85 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 39.07 | 37.22 |
| AT5G43080.1 | Thale cress | nucleus | 38.48 | 37.18 |
| CDY17091 | Canola | nucleus | 38.78 | 37.15 |
| Bra033658.1-P | Field mustard | nucleus | 38.48 | 37.08 |
| Solyc12g088520.1.1 | Tomato | nucleus | 38.19 | 36.9 |
| TraesCS5A01G072000.1 | Wheat | plastid | 40.23 | 36.7 |
| Solyc04g078310.2.1 | Tomato | nucleus | 39.65 | 36.66 |
| PGSC0003DMT400055428 | Potato | nucleus | 39.07 | 36.41 |
| Solyc12g088470.1.1 | Tomato | nucleus | 38.19 | 36.39 |
| Bra040710.1-P | Field mustard | nucleus | 39.36 | 36.39 |
| CDY17037 | Canola | nucleus, plastid | 38.48 | 36.26 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 38.78 | 35.95 |
| Zm00001d048127_P001 | Maize | plastid | 50.15 | 35.91 |
| KRH52055 | Soybean | nucleus | 37.32 | 35.75 |
| CDY47595 | Canola | nucleus, plastid | 38.48 | 35.58 |
| Bra032220.1-P | Field mustard | nucleus | 37.03 | 35.57 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 35.28 | 35.48 |
| TraesCS4A01G236700.2 | Wheat | plastid | 38.78 | 35.47 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 37.61 | 35.44 |
| KRH15427 | Soybean | nucleus, plastid | 37.61 | 35.44 |
| CDY23653 | Canola | nucleus | 36.73 | 35.29 |
| KRH61371 | Soybean | nucleus | 35.86 | 35.24 |
| Os03t0208700-00 | Rice | nucleus | 41.98 | 35.21 |
| KRH05614 | Soybean | nucleus | 37.61 | 35.15 |
| CDY66770 | Canola | nucleus | 37.03 | 35.08 |
| KRH61375 | Soybean | nucleus | 33.24 | 34.86 |
| KRH61369 | Soybean | nucleus | 33.24 | 34.86 |
| CDY47596 | Canola | nucleus | 36.73 | 34.71 |
| Bra040793.1-P | Field mustard | nucleus | 36.73 | 34.71 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 36.44 | 34.44 |
| CDY17039 | Canola | nucleus | 36.44 | 34.44 |
| CDY06757 | Canola | nucleus, plastid | 36.15 | 34.16 |
| AT1G47210.2 | Thale cress | nucleus | 37.03 | 34.14 |
| KRH61373 | Soybean | nucleus, plastid | 36.44 | 33.33 |
| PGSC0003DMT400056625 | Potato | nucleus | 36.73 | 33.16 |
| Solyc10g049360.1.1 | Tomato | nucleus | 36.15 | 32.8 |
| TraesCS3A01G157000.1 | Wheat | plastid | 37.32 | 24.95 |
| TraesCS3A01G523600.1 | Wheat | plastid | 34.99 | 23.67 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 28.57 | 23.39 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 27.41 | 23.21 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 27.41 | 22.71 |
| TraesCS5A01G108500.2 | Wheat | plastid | 33.53 | 22.64 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 27.7 | 21.79 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 33.24 | 21.71 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 20.12 | 20.97 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 27.99 | 20.87 |
| Os03t0208800-00 | Rice | nucleus | 19.53 | 16.88 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G051300.1 | EnsemblPlantsGene:TraesCS4A01G051300 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF231 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : |
Description
No Description!
Coordinates
chr4A:+:42117752..42120927
Molecular Weight (calculated)
38603.1 Da
IEP (calculated)
5.153
GRAVY (calculated)
-0.286
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVSDEESVT GPARSLGTDS EPEQPDPAAA AAAIAPYPGD IDDETAADLA RLLDPDSEQP DPAALRAGMA PYLGDIDRYM RSLEASRRPR DDYIWTTQED
101: INPKMRAVLV DWLVDVACTF RLPADTLHLA VSYVDRFLTT SVIKRHELQL LGVTALLVAA KYEDDIFVHE VQRYRGVTGN TYTAQQVVKM ETDILKSLNF
201: EMGSPTARTF LRRYITVCRG RDRAKAEKLE FLCSYLAELS LLDYDCIQFN PSVVAAAYLF LARFTISPTA HPWNLTLQRN TKYKVSDLKS CILMIHELQL
301: NGTYPGLKED AVKVKYNDRE LEGVSAMASP KNMPPRFLKN IRR
101: INPKMRAVLV DWLVDVACTF RLPADTLHLA VSYVDRFLTT SVIKRHELQL LGVTALLVAA KYEDDIFVHE VQRYRGVTGN TYTAQQVVKM ETDILKSLNF
201: EMGSPTARTF LRRYITVCRG RDRAKAEKLE FLCSYLAELS LLDYDCIQFN PSVVAAAYLF LARFTISPTA HPWNLTLQRN TKYKVSDLKS CILMIHELQL
301: NGTYPGLKED AVKVKYNDRE LEGVSAMASP KNMPPRFLKN IRR
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.