Factsheet for Bra040792.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17037	Canola	nucleus, plastid	96.98	96.98
Bra040710.1-P	Field mustard	nucleus	87.64	85.98
AT1G47230.2	Thale cress	nucleus, plastid	81.32	80.0
Bra032220.1-P	Field mustard	nucleus	70.88	72.27
Bra040753.1-P	Field mustard	nucleus, plastid	69.78	69.97
Bra040793.1-P	Field mustard	nucleus	68.41	68.59
Bra033658.1-P	Field mustard	nucleus	66.76	68.26
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	60.71	60.55
OQU91386	Sorghum	nucleus	42.86	59.77
KRH52056	Soybean	nucleus	33.79	58.29
PGSC0003DMT400055428	Potato	nucleus	57.97	57.34
Solyc04g078310.2.1	Tomato	nucleus	57.42	56.33
GSMUA_Achr10P...	Banana	nucleus	48.63	55.84
Solyc12g088530.1.1	Tomato	nucleus	54.12	55.65
KRH15427	Soybean	nucleus, plastid	55.22	55.22
PGSC0003DMT400030222	Potato	nucleus	53.57	55.08
KRH61375	Soybean	nucleus	49.45	55.05
KRH05614	Soybean	nucleus	55.22	54.77
PGSC0003DMT400030176	Potato	nucleus	53.02	54.21
Solyc12g088520.1.1	Tomato	nucleus	52.2	53.52
KRH61369	Soybean	nucleus	47.25	52.6
Solyc12g088470.1.1	Tomato	nucleus	51.37	51.94
TraesCS4D01G076900.1	Wheat	nucleus	52.75	51.89
KRH61371	Soybean	nucleus	49.73	51.86
Solyc12g088500.1.1	Tomato	nucleus	50.0	51.41
GSMUA_Achr6P11130_001	Banana	nucleus	55.22	51.41
TraesCS4B01G078300.1	Wheat	nucleus	52.2	51.21
HORVU4Hr1G013320.1	Barley	nucleus	52.47	51.21
KRH52055	Soybean	nucleus	50.0	50.84
TraesCS5B01G078200.1	Wheat	plastid	52.47	50.66
TraesCS5A01G072000.1	Wheat	plastid	52.2	50.53
TraesCS5D01G084700.1	Wheat	nucleus	52.47	50.53
TraesCS4A01G236700.2	Wheat	plastid	51.92	50.4
GSMUA_Achr2P21530_001	Banana	cytosol, nucleus, plastid	39.56	50.35
Zm00001d033365_P002	Maize	nucleus	51.1	50.0
KRH61373	Soybean	nucleus, plastid	49.73	48.27
GSMUA_Achr2P21520_001	Banana	nucleus	47.53	48.06
Os12t0581800-01	Rice	nucleus, plastid	49.73	47.01
Zm00001d013744_P001	Maize	nucleus	45.6	46.5
TraesCS4D01G253200.1	Wheat	nucleus	30.77	45.9
Zm00001d030849_P001	Maize	nucleus	50.55	43.5
EES16237	Sorghum	nucleus, plastid	50.55	42.99
HORVU5Hr1G018820.2	Barley	nucleus, plastid	51.92	41.63
Zm00001d041334_P001	Maize	nucleus, plastid	49.73	41.42
TraesCS4B01G254000.1	Wheat	nucleus	42.03	40.69
TraesCS4D01G253900.1	Wheat	nucleus	42.03	40.26
Bra000822.1-P	Field mustard	nucleus	41.48	40.05
Bra031463.1-P	Field mustard	nucleus	40.38	39.84
TraesCS4A01G050700.1	Wheat	nucleus	40.66	38.95
Bra026756.1-P	Field mustard	plastid	43.68	38.88
EER95303	Sorghum	nucleus, plastid	40.66	38.85
TraesCS4A01G051300.1	Wheat	nucleus	35.44	37.61
Bra015671.1-P	Field mustard	plastid	39.84	37.56
TraesCS4B01G253100.1	Wheat	nucleus	35.16	37.54
Bra023606.1-P	Field mustard	plastid	40.38	35.08
Bra016654.1-P	Field mustard	nucleus, plastid	42.86	35.06
Bra003563.1-P	Field mustard	plastid	41.48	34.95
Bra022173.1-P	Field mustard	nucleus, plastid	35.71	34.48
Bra032202.1-P	Field mustard	plastid	39.84	34.36
Bra008973.1-P	Field mustard	nucleus, plastid	40.93	34.1
Bra026120.1-P	Field mustard	nucleus	43.13	33.69
HORVU4Hr1G069310.3	Barley	nucleus	37.91	33.25
Bra008477.1-P	Field mustard	plastid	41.48	33.04
Bra035186.1-P	Field mustard	plastid	40.93	32.25
Os03t0607600-00	Rice	nucleus	49.73	29.77
Bra002046.1-P	Field mustard	nucleus	31.32	29.01
Zm00001d048127_P001	Maize	plastid	37.91	28.81
Bra024504.1-P	Field mustard	nucleus	32.42	28.16
Bra005880.1-P	Field mustard	nucleus, plastid	31.32	27.54
Bra017726.1-P	Field mustard	nucleus	30.49	27.34
Bra028741.1-P	Field mustard	nucleus	31.04	27.23
Bra037265.1-P	Field mustard	nucleus	30.49	27.14
Os03t0208700-00	Rice	nucleus	30.49	27.14
Bra003727.1-P	Field mustard	nucleus	26.37	25.07
Bra025831.1-P	Field mustard	nucleus	28.02	24.88
Bra016460.1-P	Field mustard	nucleus	28.02	24.88
Bra011769.1-P	Field mustard	nucleus	29.12	24.77
Bra015762.1-P	Field mustard	nucleus	27.47	23.2
Bra026065.1-P	Field mustard	nucleus	25.82	18.58
Bra036544.1-P	Field mustard	nucleus	42.31	15.6
Bra016640.1-P	Field mustard	nucleus	26.1	14.5
Os03t0208800-00	Rice	nucleus	15.66	14.36

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EnsemblPlantsGene:Bra040792	EnsemblPlants:Bra040792.1	EnsemblPlants:Bra040792.1-P	InterPro:Cyclin-A_plant
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	UniProt:M4FI63	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF270	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI000253E8EF	SEG:seg	:	:	:	:

Description

AT1G47230 (E=6e-159) CYCA3;4 | cyclin, putative

Coordinates

chrScaffold000259:-:15053..16663

Molecular Weight (calculated)

41534.3 Da

IEP (calculated)

8.359

GRAVY (calculated)

-0.295

Length

364 amino acids

Sequence
(BLAST)

001: MAENQNSTRM TRAAAKRKAS VTDENPGSKK RVVLGELPNN SNVAAPLIPL QERETQKPKS TLFAAKKQTK NPPLPQTVDF ESGSSDPQMC GPFVADICAY
101: LREMEGKLKQ RPLHDYIEKV QSDLTPSMRG VLMDWLVEVA EEYKLVSDTL YLTVSYVDRF LSAKPINRQR LQLVGVSAML IASKYEEISP PKVEDFVYIT
201: DNTFTRQDVV SMEADILLAL RFELGCPTIK TFLRRFTRVA QEDFNESLLQ IECLCCYLSE MSLLDYSCVK FLPSMLAASA VFLARFIIRP KQRPWNQMLE
301: EYTKYKASDL QQPVGIIHDL YLSRRGNSLE AVRNKYKQHK FKCVATMPVS PELPQAFFED VTIR

Best Arabidopsis Sequence Match ( AT1G47230.1 )
(BLAST)

001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA

Arabidopsis Description

CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.