Factsheet for Bra005880.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006369.1-P
Bra007982.1-P
Bra007983.1-P
Bra009841.1-P
Bra012258.1-P
Bra013838.1-P
Bra014835.1-P
Bra016143.1-P
Bra017408.1-P
Bra018762.1-P
Bra018764.1-P
Bra020500.1-P
Bra026274.1-P
Bra032269.1-P
Bra032422.1-P
Bra034380.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06150.1	Bra012258.1-P	AT1G20930.1	20706207
AT5G06150.1	Bra018762.1-P	AT1G48920.1	20706207
AT5G06150.1	Bra018764.1-P	AT1G48920.1	20706207
AT5G06150.1	Bra032269.1-P	AT1G48920.1	20706207
AT5G06150.1	Bra007982.1-P	AT1G71380.1	20706207
AT5G06150.1	Bra007983.1-P	AT1G71380.1	20706207
AT5G06150.1	Bra016143.1-P	AT1G71380.1	20706207
AT5G06150.1	Bra034380.1-P	AT2G27970.1	20706207
AT5G06150.1	Bra006369.1-P	AT3G11270.1	20706207
AT5G06150.1	Bra017408.1-P	AT3G11270.1	20706207
AT5G06150.1	Bra032422.1-P	AT3G11270.1	20706207
AT5G06150.1	Bra014835.1-P	AT3G54180.1	20706207
AT5G06150.1	Bra013838.1-P	AT4G24820.1	20706207
AT5G06150.1	Bra026274.1-P	AT4G28230.1	20706207
AT5G06150.1	Bra009841.1-P	AT5G25460.1	20706207
AT5G06150.1	Bra020500.1-P	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11354	Canola	plastid	97.58	93.3
Bra028741.1-P	Field mustard	nucleus	84.06	83.86
AT5G06150.1	Thale cress	nucleus	86.72	80.67
Bra002046.1-P	Field mustard	nucleus	65.46	68.96
KRH66720	Soybean	endoplasmic reticulum, vacuole	27.78	57.79
TraesCSU01G217300.1	Wheat	cytosol	28.99	55.56
VIT_08s0040g00930.t01	Wine grape	nucleus	56.76	51.88
KRH66715	Soybean	nucleus	49.03	51.79
Zm00001d019469_P001	Maize	extracellular	17.87	51.75
KRG95055	Soybean	nucleus	56.52	51.43
KRH66713	Soybean	nucleus	56.28	51.32
GSMUA_Achr4P10090_001	Banana	nucleus	51.93	50.59
Bra011769.1-P	Field mustard	nucleus	51.69	50.0
VIT_13s0067g01420.t01	Wine grape	nucleus	54.35	48.7
Solyc10g078330.1.1	Tomato	nucleus	49.76	48.7
GSMUA_AchrUn_...	Banana	nucleus	35.02	48.66
KRH66718	Soybean	plastid	43.72	48.53
AT1G34460.5	Thale cress	cytosol	57.25	47.59
PGSC0003DMT400018480	Potato	nucleus	48.79	47.53
HORVU0Hr1G001680.1	Barley	nucleus	36.72	47.5
EES03772	Sorghum	nucleus, plastid	51.21	47.22
Solyc10g080950.1.1	Tomato	nucleus	52.66	47.19
GSMUA_Achr7P21380_001	Banana	nucleus	51.69	46.83
PGSC0003DMT400072211	Potato	nucleus	52.42	46.77
GSMUA_Achr8P23970_001	Banana	nucleus	49.03	46.67
GSMUA_Achr10P...	Banana	nucleus	50.72	46.36
GSMUA_Achr3P24980_001	Banana	nucleus	44.44	45.77
Zm00001d012560_P002	Maize	nucleus, plastid	49.28	45.43
TraesCS1D01G309300.1	Wheat	nucleus, plastid	47.83	45.41
KXG24389	Sorghum	nucleus	27.54	45.24
KRG95056	Soybean	cytosol	42.27	45.22
HORVU1Hr1G068080.1	Barley	plastid	37.2	45.03
TraesCS1B01G320900.1	Wheat	nucleus, plastid	47.34	44.95
HORVU1Hr1G068010.7	Barley	mitochondrion, nucleus	45.17	44.52
HORVU3Hr1G078880.2	Barley	nucleus	48.31	44.15
TraesCS1A01G309800.1	Wheat	nucleus	46.38	44.04
TraesCS3B01G363200.3	Wheat	nucleus	48.79	43.82
TraesCS3D01G326600.1	Wheat	nucleus	48.07	43.74
TraesCS1D01G309400.1	Wheat	nucleus	46.14	43.71
TraesCS3A01G333000.2	Wheat	nucleus	48.31	43.48
HORVU0Hr1G026010.1	Barley	nucleus, plastid	46.38	43.34
HORVU1Hr1G068160.2	Barley	nucleus, plastid	46.38	43.34
HORVU0Hr1G001690.16	Barley	nucleus, peroxisome	45.65	43.15
TraesCS1B01G321000.1	Wheat	nucleus	44.69	42.43
Zm00001d043164_P002	Maize	nucleus	49.52	42.36
Zm00001d010656_P001	Maize	nucleus	44.44	41.26
Os01t0281200-01	Rice	nucleus	41.06	40.19
EES18429	Sorghum	mitochondrion	44.2	39.78
TraesCS3A01G192100.1	Wheat	nucleus, plastid	39.13	39.13
TraesCS3D01G195200.1	Wheat	plastid	38.89	38.98
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	30.68	38.6
Bra024504.1-P	Field mustard	nucleus	38.16	37.71
Os05t0493500-00	Rice	nucleus	44.2	37.58
Bra037265.1-P	Field mustard	nucleus	35.27	35.7
EES02793	Sorghum	nucleus	39.86	35.64
Zm00001d008221_P001	Maize	nucleus	40.82	35.28
Bra003727.1-P	Field mustard	nucleus	32.61	35.25
Bra017726.1-P	Field mustard	nucleus	34.54	35.22
Bra016460.1-P	Field mustard	nucleus	34.78	35.12
Bra015762.1-P	Field mustard	nucleus	36.23	34.8
Bra025831.1-P	Field mustard	nucleus	34.06	34.39
Bra033658.1-P	Field mustard	nucleus	28.99	33.71
Bra040793.1-P	Field mustard	nucleus	29.23	33.33
Bra040753.1-P	Field mustard	nucleus, plastid	28.99	33.06
Bra032220.1-P	Field mustard	nucleus	28.5	33.05
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	31.4	32.83
HORVU3Hr1G040990.2	Barley	nucleus, plastid	38.41	32.32
Bra040792.1-P	Field mustard	nucleus, plastid	27.54	31.32
Bra040710.1-P	Field mustard	nucleus	27.54	30.73
Zm00001d020033_P001	Maize	nucleus	40.1	30.51
Zm00001d020996_P001	Maize	nucleus	39.13	29.78
Bra015671.1-P	Field mustard	plastid	26.81	28.76
Bra000822.1-P	Field mustard	nucleus	25.85	28.38
Bra023606.1-P	Field mustard	plastid	28.5	28.16
Bra022173.1-P	Field mustard	nucleus, plastid	25.36	27.85
Bra031463.1-P	Field mustard	nucleus	24.64	27.64
Bra032202.1-P	Field mustard	plastid	27.78	27.25
Bra026756.1-P	Field mustard	plastid	26.81	27.14
Bra026065.1-P	Field mustard	nucleus	31.88	26.09
Bra003563.1-P	Field mustard	plastid	26.09	25.0
Bra016654.1-P	Field mustard	nucleus, plastid	26.57	24.72
Bra008973.1-P	Field mustard	nucleus, plastid	25.85	24.49
Bra026120.1-P	Field mustard	nucleus	27.05	24.03
Bra008477.1-P	Field mustard	plastid	26.09	23.63
Bra035186.1-P	Field mustard	plastid	26.33	23.59
Bra016640.1-P	Field mustard	nucleus	33.09	20.92
Bra036544.1-P	Field mustard	nucleus	27.78	11.65

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	EnsemblPlantsGene:Bra005880	EnsemblPlants:Bra005880.1	EnsemblPlants:Bra005880.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M4CNU2	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF267	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000253F5DE
SEG:seg	:	:	:	:	:

Description

AT5G06150 (E=7e-154) CYC1BAT, CYCB1;2 | CYC1BAT; cyclin-dependent protein kinase regulator

Coordinates

chrA03:-:1038254..1039981

Molecular Weight (calculated)

46482.6 Da

IEP (calculated)

9.700

GRAVY (calculated)

-0.278

Length

414 amino acids

Sequence
(BLAST)

001: MATRTNMPEQ ARGVNKNGAV KNRRPLGDIG NNLVSVPVAQ GGKPQPPINR PITRSFRAQL LANAQKPQPL APRNNNQEAQ KAVPKKNLVI KLKPQQTKHV
101: EVAEPPKKVE KKPAAKVTYS SVLSARSKAA CSITAKPKIL DIDESDKDNH LAAVEYVDDM YAFYKEVEKE SQPKMYMHIQ TDVNEKMRAI LVDWLLEVHI
201: KFELNLETLY LTVNIIDRFL SVKAVPKREL QLLGISALLI ASKYEEIWPP QVNDLVYVTD NAYNNKQILV MEKTILGNLE WYLTVPTQYV FLVRFIKASM
301: SDPEMENMVH FLAELGMMHY DTLKFCPSML AASAVYTARC ALKKSPAWTE TLTFHTGYSE SEIMECSKLL ALHHSRCGES RLRAVYKKYS KVENGGVALV
401: SPAKSLLSAA PLSA

Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)

001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS

Arabidopsis Description

CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.