Factsheet for Solyc10g080950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008370.2.1
Solyc01g009620.2.1
Solyc01g009630.2.1
Solyc01g100570.2.1
Solyc02g014310.2.1
Solyc03g025880.2.1
Solyc03g111380.2.1
Solyc04g081190.2.1
Solyc04g082840.2.1
Solyc05g053650.2.1
Solyc07g009140.2.1
Solyc07g054690.1.1
Solyc08g066330.1.1
Solyc08g067030.2.1
Solyc09g009140.2.1
Solyc09g091750.2.1
Solyc09g098110.2.1
Solyc10g074720.1.1
Solyc11g040340.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11520.1	Solyc09g098110.2.1	AT1G05805.1	20706207
AT3G11520.1	Solyc01g100570.2.1	AT1G56110.1	20706207
AT3G11520.1	Solyc03g111380.2.1	AT3G61650.1	20706207
AT3G11520.1	Solyc01g009620.2.1	AT4G25550.1	20706207
AT3G11520.1	Solyc01g009630.2.1	AT4G25550.1	20706207
AT3G11520.1	Solyc03g025880.2.1	AT4G25550.1	20706207
AT3G11520.1	Solyc04g081190.2.1	AT4G38900.1	20706207
AT3G11520.1	Solyc09g009140.2.1	AT5G06680.1	20706207
AT4G37490.1	Solyc04g082840.2.1	AT1G20930.1	20706207
AT4G37490.1	Solyc04g082840.2.1	AT1G76540.1	20706207
AT4G37490.1	Solyc08g066330.1.1	AT3G48750.1	12065421
AT4G37490.1	Solyc10g074720.1.1	AT3G54180.1	12065421
AT5G06150.1	Solyc05g053650.2.1	AT1G04810.1	20706207
AT5G06150.1	Solyc09g091750.2.1	AT1G04810.1	20706207
AT5G06150.1	Solyc04g082840.2.1	AT1G20930.1	20706207
AT5G06150.1	Solyc02g014310.2.1	AT1G48920.1	20706207
AT5G06150.1	Solyc11g040340.1.1	AT1G71380.1	20706207
AT5G06150.1	Solyc01g008370.2.1	AT3G11270.1	20706207
AT5G06150.1	Solyc10g074720.1.1	AT3G54180.1	20706207
AT5G06150.1	Solyc07g009140.2.1	AT4G24820.1	20706207
AT5G06150.1	Solyc07g054690.1.1	AT4G28230.1	20706207
AT5G06150.1	Solyc08g067030.2.1	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072211	Potato	nucleus	97.62	97.2
Solyc10g078330.1.1	Tomato	nucleus	68.4	74.7
VIT_08s0040g00930.t01	Wine grape	nucleus	66.23	67.55
VIT_13s0067g01420.t01	Wine grape	nucleus	66.02	66.02
KRG95055	Soybean	nucleus	62.99	63.96
KRH66713	Soybean	nucleus	62.77	63.88
KRH66720	Soybean	endoplasmic reticulum, vacuole	25.54	59.3
KRH66715	Soybean	nucleus	50.22	59.18
KRH66718	Soybean	plastid	46.97	58.18
GSMUA_Achr7P21380_001	Banana	nucleus	56.93	57.55
Solyc01g009040.2.1	Tomato	nucleus	54.11	57.47
CDY69551	Canola	nucleus	43.94	57.18
GSMUA_Achr10P...	Banana	nucleus	55.63	56.73
GSMUA_Achr4P10090_001	Banana	nucleus	52.16	56.71
CDY62475	Canola	nucleus	42.86	56.41
AT3G11520.1	Thale cress	nucleus	50.0	55.8
Bra002046.1-P	Field mustard	nucleus	47.4	55.73
TraesCSU01G217300.1	Wheat	cytosol	25.76	55.09
Solyc06g073610.2.1	Tomato	nucleus	52.38	55.0
HORVU0Hr1G001680.1	Barley	nucleus	37.88	54.69
Bra028741.1-P	Field mustard	nucleus	48.7	54.22
GSMUA_Achr8P23970_001	Banana	nucleus	50.87	54.02
KRG95056	Soybean	cytosol	45.02	53.75
Zm00001d019469_P001	Maize	extracellular	16.45	53.15
Bra005880.1-P	Field mustard	nucleus, plastid	47.19	52.66
EES03772	Sorghum	nucleus, plastid	51.08	52.56
GSMUA_Achr3P24980_001	Banana	nucleus	45.67	52.49
HORVU1Hr1G068080.1	Barley	plastid	38.53	52.05
Zm00001d012560_P002	Maize	nucleus, plastid	50.43	51.89
AT4G37490.1	Thale cress	nucleus	48.05	51.87
CDX69311	Canola	nucleus	46.54	51.31
CDY11354	Canola	plastid	48.05	51.27
CDX80988	Canola	plastid	47.4	51.17
AT5G06150.1	Thale cress	nucleus	49.13	51.01
HORVU3Hr1G078880.2	Barley	nucleus	50.0	50.99
TraesCS3D01G326600.1	Wheat	nucleus	50.22	50.99
KXG24389	Sorghum	nucleus	27.71	50.79
TraesCS3B01G363200.3	Wheat	nucleus	50.65	50.76
GSMUA_AchrUn_...	Banana	nucleus	32.68	50.67
HORVU1Hr1G068010.7	Barley	mitochondrion, nucleus	45.89	50.48
TraesCS3A01G333000.2	Wheat	nucleus	50.22	50.43
Bra011769.1-P	Field mustard	nucleus	46.32	50.0
CDX75659	Canola	nucleus	46.1	49.77
TraesCS1D01G309300.1	Wheat	nucleus, plastid	46.1	48.85
HORVU0Hr1G001690.16	Barley	nucleus, peroxisome	46.1	48.63
TraesCS1B01G320900.1	Wheat	nucleus, plastid	45.89	48.62
TraesCS1B01G321000.1	Wheat	nucleus	45.67	48.39
TraesCS1D01G309400.1	Wheat	nucleus	45.67	48.28
TraesCS1A01G309800.1	Wheat	nucleus	45.45	48.17
Zm00001d043164_P002	Maize	nucleus	50.22	47.93
HORVU1Hr1G068160.2	Barley	nucleus, plastid	44.81	46.73
HORVU0Hr1G026010.1	Barley	nucleus, plastid	44.81	46.73
Zm00001d010656_P001	Maize	nucleus	45.02	46.64
Os01t0281200-01	Rice	nucleus	42.42	46.34
TraesCS3D01G195200.1	Wheat	plastid	40.69	45.52
EES18429	Sorghum	mitochondrion	45.02	45.22
TraesCS3A01G192100.1	Wheat	nucleus, plastid	40.26	44.93
Os05t0493500-00	Rice	nucleus	45.24	42.92
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	29.87	41.95
EES02793	Sorghum	nucleus	39.83	39.74
Solyc04g082430.2.1	Tomato	nucleus	32.9	38.68
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	33.12	38.64
Zm00001d008221_P001	Maize	nucleus	40.04	38.62
Solyc03g032190.2.1	Tomato	nucleus	34.85	37.35
Solyc02g061650.1.1	Tomato	nucleus	28.14	37.04
Solyc12g094600.1.1	Tomato	nucleus	33.98	36.94
Solyc02g082820.2.1	Tomato	nucleus	34.63	36.87
HORVU3Hr1G040990.2	Barley	nucleus, plastid	39.18	36.79
CDY14091	Canola	plastid	48.27	33.99
Zm00001d020033_P001	Maize	nucleus	39.39	33.46
Zm00001d020996_P001	Maize	nucleus	38.96	33.09
AT1G34460.5	Thale cress	cytosol	34.85	32.33
CDY04980	Canola	nucleus	48.27	31.06
Solyc12g088530.1.1	Tomato	nucleus	22.08	28.81
Solyc04g078310.2.1	Tomato	nucleus	22.94	28.57
Solyc12g088470.1.1	Tomato	nucleus	21.43	27.5
Solyc12g088500.1.1	Tomato	nucleus	20.56	26.84
Solyc12g088520.1.1	Tomato	nucleus	20.56	26.76
Solyc11g005090.1.1	Tomato	plastid	27.27	25.71
Solyc10g049360.1.1	Tomato	nucleus	21.0	25.66
Solyc06g065680.2.1	Tomato	nucleus, plastid	25.97	25.26
Solyc03g120440.1.1	Tomato	nucleus, plastid	22.94	23.14
Solyc07g066660.2.1	Tomato	nucleus	31.39	19.62

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:K4D2Y2	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF352	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc10g080950.1	EnsemblPlants:Solyc10g080950.1.1	UniParc:UPI0002769779	SEG:seg

Description

No Description!

Coordinates

chr10:+:62136131..62138483

Molecular Weight (calculated)

50941.5 Da

IEP (calculated)

8.895

GRAVY (calculated)

-0.188

Length

462 amino acids

Sequence
(BLAST)

001: MAARNVLQQQ NRGEAVPGAI KQKNMAGAQG RNRKALGDIG NMVTVRGGVE GGKPLPQVSR PITRSFCAQL LANAQAAADN QKKSMVVNGD GPIVANGALP
101: VKAAPAARKP AQKKAAIVKP MPEVIEISPD TVEQVKENKQ KKKAANDSSM KKAATLTSTL TARSKAACGL SHKPKNQIVD IDATDVNNEL AVVEYVEDIY
201: TFYKIAENES RIHDYMDSQP EINEKMRSIL IDWLIEVHQK FELNQETLYL TINIVDRYLA VTTTSRRELQ LVGMSAMLIA SKYEEIWAPE VNDFVCISDR
301: AYDHEQVLGM EKRILGQLEW YLTVPTPYVF LVRFIKAAVS DAQANVTVLN SCNVTSMENM VYFLAELGLM NYATNSYCSS MIAASAVYVA RHALNCSPFW
401: NETLKLHTGF SESQLLGCAK LLVSYHMEAP QHKLRVIYRK YSSSHRGAVA LNPPAISLLG SS

Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)

001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS

Arabidopsis Description

CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.