Factsheet for Solyc06g073610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015245	Potato	nucleus	93.86	94.08
Solyc01g009040.2.1	Tomato	nucleus	63.64	64.37
VIT_06s0009g02090.t01	Wine grape	nucleus	55.45	58.37
Solyc10g078330.1.1	Tomato	nucleus	55.23	57.45
Zm00001d019469_P001	Maize	extracellular	18.18	55.94
HORVU0Hr1G001680.1	Barley	nucleus	40.45	55.62
TraesCSU01G217300.1	Wheat	cytosol	27.27	55.56
KRH14611	Soybean	nucleus	55.23	55.35
KRH73516	Soybean	nucleus	55.0	55.0
HORVU1Hr1G068080.1	Barley	plastid	41.14	52.92
Solyc10g080950.1.1	Tomato	nucleus	55.0	52.38
GSMUA_Achr4P10090_001	Banana	nucleus	50.23	52.0
GSMUA_Achr7P21380_001	Banana	nucleus	52.5	50.55
GSMUA_Achr3P24980_001	Banana	nucleus	46.14	50.5
KXG24389	Sorghum	nucleus	28.86	50.4
HORVU1Hr1G068010.7	Barley	mitochondrion, nucleus	47.95	50.24
GSMUA_AchrUn_...	Banana	nucleus	33.64	49.66
HORVU0Hr1G001690.16	Barley	nucleus, peroxisome	48.86	49.09
TraesCS1D01G309300.1	Wheat	nucleus, plastid	47.95	48.39
GSMUA_Achr10P...	Banana	nucleus	49.77	48.34
EES03772	Sorghum	nucleus, plastid	49.32	48.33
TraesCS1A01G309800.1	Wheat	nucleus	47.5	47.94
TraesCS1B01G320900.1	Wheat	nucleus, plastid	47.5	47.94
Zm00001d012560_P002	Maize	nucleus, plastid	48.64	47.66
GSMUA_Achr8P23970_001	Banana	nucleus	47.05	47.59
TraesCS1D01G309400.1	Wheat	nucleus	47.05	47.37
HORVU1Hr1G068160.2	Barley	nucleus, plastid	47.5	47.18
HORVU0Hr1G026010.1	Barley	nucleus, plastid	47.5	47.18
HORVU3Hr1G078880.2	Barley	nucleus	48.41	47.02
TraesCS3D01G326600.1	Wheat	nucleus	48.41	46.81
TraesCS3B01G363200.3	Wheat	nucleus	48.86	46.64
TraesCS1B01G321000.1	Wheat	nucleus	46.14	46.56
TraesCS3A01G333000.2	Wheat	nucleus	48.41	46.3
Os01t0281200-01	Rice	nucleus	44.32	46.1
Zm00001d010656_P001	Maize	nucleus	45.68	45.07
Zm00001d043164_P002	Maize	nucleus	49.55	45.04
TraesCS3A01G192100.1	Wheat	nucleus, plastid	41.36	43.96
TraesCS3D01G195200.1	Wheat	plastid	41.14	43.83
EES18429	Sorghum	mitochondrion	45.45	43.48
Os05t0493500-00	Rice	nucleus	46.14	41.68
EES02793	Sorghum	nucleus	42.5	40.39
Zm00001d008221_P001	Maize	nucleus	43.41	39.87
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	29.32	39.21
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	34.32	38.13
HORVU3Hr1G040990.2	Barley	nucleus, plastid	40.91	36.59
Solyc04g082430.2.1	Tomato	nucleus	30.91	34.61
Solyc12g094600.1.1	Tomato	nucleus	33.18	34.35
Solyc02g082820.2.1	Tomato	nucleus	33.86	34.33
Zm00001d020033_P001	Maize	nucleus	42.27	34.19
Solyc03g032190.2.1	Tomato	nucleus	33.41	34.11
Zm00001d020996_P001	Maize	nucleus	41.36	33.46
Solyc02g061650.1.1	Tomato	nucleus	26.59	33.33
Solyc12g088530.1.1	Tomato	nucleus	24.77	30.79
Solyc04g078310.2.1	Tomato	nucleus	25.23	29.92
Solyc12g088470.1.1	Tomato	nucleus	23.86	29.17
Solyc12g088500.1.1	Tomato	nucleus	23.18	28.81
Solyc12g088520.1.1	Tomato	nucleus	22.95	28.45
Solyc10g049360.1.1	Tomato	nucleus	23.41	27.25
Solyc11g005090.1.1	Tomato	plastid	27.95	25.1
Solyc06g065680.2.1	Tomato	nucleus, plastid	26.82	24.84
Solyc03g120440.1.1	Tomato	nucleus, plastid	25.0	24.02
Solyc07g066660.2.1	Tomato	nucleus	32.73	19.49

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:K4C980	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF267	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc06g073610.2	EnsemblPlants:Solyc06g073610.2.1	UniParc:UPI0002765F96	SEG:seg

Description

No Description!

Coordinates

chr6:+:45417879..45420768

Molecular Weight (calculated)

48962.2 Da

IEP (calculated)

9.631

GRAVY (calculated)

-0.330

Length

440 amino acids

Sequence
(BLAST)

001: MANGDAVPKI LPKGGGGGEV KKKNGQANGR TRRALGDIGN IVTGPAVGAK PQTKVSHPIT RRSAAQLIAK GQEPVQKNKT KPLVTKGVAA RKVGVPAKAE
101: AIKKDYVKAK AGTISGICPE EDVKTIEKIP LKERKVRKSG KTLTSILTAR SKAACGLSNK PRSQIVDIDA ADIDNHLAGV EYVEDIYKFY KLTEDENRPC
201: DYMDSQPEIN DRVRAILVDW LIEAHKRFEL RPESLYLTVN IMDRFLSEEP VPRRELQLLC ISSMLIASKY EEIWAPEQVN DFLTITDNAY VRDQILLMEK
301: VILGKLEWYL TVPTPYVFLV RYIKAAVPSD QEMENMTFFL AELGLMNYTT VISYCPSKIA ASAVYAARST LNRSPRWTDT LKHHTGYTED QLRECAKQLV
401: SFHFGAAENK LKAVYRKFSS PDRCAVALLP PARDVHIGSS

Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)

001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS

Arabidopsis Description

CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.