Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G321000.1 | Wheat | nucleus | 94.28 | 94.5 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 90.85 | 91.06 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 64.07 | 87.5 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 86.96 | 85.78 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 86.96 | 85.78 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 80.55 | 83.81 |
| HORVU1Hr1G068080.1 | Barley | plastid | 65.22 | 83.33 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 81.69 | 81.51 |
| Zm00001d010656_P001 | Maize | nucleus | 60.41 | 59.19 |
| EES18429 | Sorghum | mitochondrion | 62.24 | 59.13 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 59.73 | 57.36 |
| Os05t0493500-00 | Rice | nucleus | 61.56 | 55.24 |
| PGSC0003DMT400058457 | Potato | nucleus | 48.97 | 51.2 |
| Solyc01g009040.2.1 | Tomato | nucleus | 49.89 | 50.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.41 | 48.99 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 50.57 | 48.79 |
| CDY69551 | Canola | nucleus | 39.59 | 48.73 |
| CDY62475 | Canola | nucleus | 38.67 | 48.15 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 21.74 | 47.74 |
| KRH14611 | Soybean | nucleus | 47.83 | 47.61 |
| PGSC0003DMT400015245 | Potato | nucleus | 47.83 | 47.61 |
| AT2G26760.1 | Thale cress | nucleus | 42.11 | 47.55 |
| KRH73516 | Soybean | nucleus | 47.6 | 47.27 |
| Bra028741.1-P | Field mustard | nucleus | 44.85 | 47.23 |
| AT3G11520.1 | Thale cress | nucleus | 44.62 | 47.1 |
| Solyc06g073610.2.1 | Tomato | nucleus | 47.37 | 47.05 |
| KRH66715 | Soybean | nucleus | 42.11 | 46.94 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 44.85 | 46.89 |
| KRG95055 | Soybean | nucleus | 48.51 | 46.59 |
| PGSC0003DMT400018480 | Potato | nucleus | 45.31 | 46.59 |
| Bra002046.1-P | Field mustard | nucleus | 41.88 | 46.56 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 49.2 | 46.54 |
| KRH66713 | Soybean | nucleus | 48.28 | 46.48 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 43.71 | 46.14 |
| Solyc10g078330.1.1 | Tomato | nucleus | 44.39 | 45.86 |
| Solyc10g080950.1.1 | Tomato | nucleus | 48.28 | 45.67 |
| CDX80988 | Canola | plastid | 44.62 | 45.56 |
| PGSC0003DMT400072211 | Potato | nucleus | 48.28 | 45.47 |
| CDY11354 | Canola | plastid | 44.62 | 45.03 |
| AT4G37490.1 | Thale cress | nucleus | 43.48 | 44.39 |
| CDX69311 | Canola | nucleus | 42.56 | 44.39 |
| TraesCS3D01G195200.1 | Wheat | plastid | 41.88 | 44.31 |
| CDX75659 | Canola | nucleus | 43.25 | 44.16 |
| Bra011769.1-P | Field mustard | nucleus | 43.25 | 44.16 |
| AT5G06150.1 | Thale cress | nucleus | 44.62 | 43.82 |
| KRH66718 | Soybean | plastid | 36.61 | 42.9 |
| KRG95056 | Soybean | cytosol | 35.47 | 40.05 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 33.87 | 35.32 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 33.87 | 35.15 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 28.38 | 33.51 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 17.62 | 31.56 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 26.77 | 30.95 |
| CDY14091 | Canola | plastid | 44.62 | 29.73 |
| AT1G34460.5 | Thale cress | cytosol | 32.49 | 28.51 |
| CDY04980 | Canola | nucleus | 44.39 | 27.02 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 23.34 | 26.84 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 27.92 | 25.58 |
| TraesCS3D01G529100.1 | Wheat | plastid | 28.6 | 24.75 |
| TraesCS3D01G164600.1 | Wheat | plastid | 28.83 | 24.71 |
| TraesCS5D01G121100.2 | Wheat | plastid | 28.15 | 24.21 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G309400.1 | EnsemblPlantsGene:TraesCS1D01G309400 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF267 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.2 | : |
Description
No Description!
Coordinates
chr1D:+:405280875..405283270
Molecular Weight (calculated)
48084.5 Da
IEP (calculated)
9.667
GRAVY (calculated)
-0.188
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRHNQHAA AAPQPTTRGA AVPAGKQKDA GGRPGAGGNR RVLGDIGNVV HAHVLDGKIQ LPAGINRPIT RSFGAQLLQK AQADPSKNGV AVPPAARAGL
101: KPVAKKVPVK LKPAAPRPEP AAKIVTGSGE NRKPSEVAAV CSAPRKKVVH TLTTVLSHRS KEASIDDIDK LDGDNELAVV DYIDDIYRYY KEAQHECRPI
201: DYMGSQPEIN PKMRAILIDW LVEVTHKFEL MPESMYLTMY VIDRFLSLQA VPRRELQLVG MAAMLISCKY EEIWAPEVDD FISIADYSYS RQQILSMEKN
301: ILNSMAWNLT VPTPYVFLVR FAKAAGSDKE LEHMIFFFAE MALMEYGLVT VRPSLVAASA VYAARCTLKR SPVWTETLKH HTGFAEPQLL EPAKMLVMAH
401: AAAPESKLKA IYKKYSCEQY GRVSLRPPAV AAPQRLA
101: KPVAKKVPVK LKPAAPRPEP AAKIVTGSGE NRKPSEVAAV CSAPRKKVVH TLTTVLSHRS KEASIDDIDK LDGDNELAVV DYIDDIYRYY KEAQHECRPI
201: DYMGSQPEIN PKMRAILIDW LVEVTHKFEL MPESMYLTMY VIDRFLSLQA VPRRELQLVG MAAMLISCKY EEIWAPEVDD FISIADYSYS RQQILSMEKN
301: ILNSMAWNLT VPTPYVFLVR FAKAAGSDKE LEHMIFFFAE MALMEYGLVT VRPSLVAASA VYAARCTLKR SPVWTETLKH HTGFAEPQLL EPAKMLVMAH
401: AAAPESKLKA IYKKYSCEQY GRVSLRPPAV AAPQRLA
001: MATGPVVHPQ PVRGDPIDLK NAAAKNRRAL GDIGNVDSLI GVEGGKLNRP ITRNFRAQLL ENAQVAAAAN KKAPILDGVT KKQEVVRAVQ KKARGDKREP
101: SKPIEVIVIS PDTNEVAKAK ENKKKVTYSS VLDARSKAAS KTLDIDYVDK ENDLAAVEYV EDMYIFYKEV VNESKPQMYM HTQPEIDEKM RSILIDWLVE
201: VHVKFDLSPE TLYLTVNIID RFLSLKTVPR RELQLVGVSA LLIASKYEEI WPPQVNDLVY VTDNSYNSRQ ILVMEKTILG NLEWYLTVPT QYVFLVRFIK
301: ASGSDQKLEN LVHFLAELGL MHHDSLMFCP SMLAASAVYT ARCCLNKTPT WTDTLKFHTG YSESQLMDCS KLLAFIHSKA GESKLRGVLK KYSKLGRGAV
401: ALISPAKSLM SSAP
101: SKPIEVIVIS PDTNEVAKAK ENKKKVTYSS VLDARSKAAS KTLDIDYVDK ENDLAAVEYV EDMYIFYKEV VNESKPQMYM HTQPEIDEKM RSILIDWLVE
201: VHVKFDLSPE TLYLTVNIID RFLSLKTVPR RELQLVGVSA LLIASKYEEI WPPQVNDLVY VTDNSYNSRQ ILVMEKTILG NLEWYLTVPT QYVFLVRFIK
301: ASGSDQKLEN LVHFLAELGL MHHDSLMFCP SMLAASAVYT ARCCLNKTPT WTDTLKFHTG YSESQLMDCS KLLAFIHSKA GESKLRGVLK KYSKLGRGAV
401: ALISPAKSLM SSAP
Arabidopsis Description
CYCB1-3Cyclin-B1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q39069]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.