Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 94.52 | 98.57 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 68.26 | 93.44 |
| HORVU1Hr1G068080.1 | Barley | plastid | 69.63 | 89.18 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 82.19 | 82.57 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 81.96 | 82.34 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 81.51 | 81.69 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 81.28 | 81.65 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 79.91 | 80.28 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 80.82 | 79.91 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 80.82 | 79.91 |
| EES18429 | Sorghum | mitochondrion | 60.96 | 58.04 |
| Zm00001d010656_P001 | Maize | nucleus | 58.9 | 57.85 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 58.22 | 56.29 |
| Os05t0493500-00 | Rice | nucleus | 60.96 | 54.83 |
| PGSC0003DMT400058457 | Potato | nucleus | 50.23 | 52.63 |
| Solyc01g009040.2.1 | Tomato | nucleus | 50.46 | 50.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.79 | 49.66 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 22.37 | 49.25 |
| PGSC0003DMT400015245 | Potato | nucleus | 49.32 | 49.2 |
| Solyc06g073610.2.1 | Tomato | nucleus | 49.09 | 48.86 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 50.46 | 48.79 |
| KRG95055 | Soybean | nucleus | 50.23 | 48.35 |
| KRH73516 | Soybean | nucleus | 48.4 | 48.18 |
| KRH14611 | Soybean | nucleus | 48.17 | 48.06 |
| KRH66713 | Soybean | nucleus | 49.77 | 48.02 |
| KRH66715 | Soybean | nucleus | 42.92 | 47.96 |
| AT2G26760.1 | Thale cress | nucleus | 42.24 | 47.8 |
| PGSC0003DMT400018480 | Potato | nucleus | 45.89 | 47.29 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 49.77 | 47.19 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 44.52 | 46.65 |
| CDY69551 | Canola | nucleus | 37.67 | 46.48 |
| Bra028741.1-P | Field mustard | nucleus | 43.84 | 46.27 |
| Solyc10g080950.1.1 | Tomato | nucleus | 48.63 | 46.1 |
| Solyc10g078330.1.1 | Tomato | nucleus | 44.52 | 46.1 |
| CDY62475 | Canola | nucleus | 36.76 | 45.87 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 43.15 | 45.65 |
| AT3G11520.1 | Thale cress | nucleus | 43.15 | 45.65 |
| PGSC0003DMT400072211 | Potato | nucleus | 47.95 | 45.26 |
| AT4G37490.1 | Thale cress | nucleus | 44.06 | 45.09 |
| Bra002046.1-P | Field mustard | nucleus | 40.18 | 44.78 |
| CDX80988 | Canola | plastid | 43.38 | 44.39 |
| CDY11354 | Canola | plastid | 43.84 | 44.34 |
| CDX69311 | Canola | nucleus | 42.24 | 44.15 |
| KRH66718 | Soybean | plastid | 37.44 | 43.97 |
| AT5G06150.1 | Thale cress | nucleus | 44.29 | 43.6 |
| CDX75659 | Canola | nucleus | 42.47 | 43.46 |
| Bra011769.1-P | Field mustard | nucleus | 42.47 | 43.46 |
| KRG95056 | Soybean | cytosol | 35.84 | 40.57 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 34.02 | 35.48 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 39.27 | 34.96 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 22.15 | 34.89 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 27.17 | 31.9 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 33.1 | 30.79 |
| CDY14091 | Canola | plastid | 44.06 | 29.42 |
| AT1G34460.5 | Thale cress | cytosol | 32.19 | 28.31 |
| CDY04980 | Canola | nucleus | 43.84 | 26.74 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 25.8 | 24.89 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 27.85 | 24.06 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 21.92 | 23.13 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G001690.16 | EnsemblPlantsGene:HORVU0Hr1G001690 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF267 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SEG:seg | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000B467F85 | UniProt:A0A287DUI8 | MapMan:13.1.1.1.2 | : |
Description
No Description!
Coordinates
chrchrUn:-:7937804..7940326
Molecular Weight (calculated)
48326.6 Da
IEP (calculated)
9.823
GRAVY (calculated)
-0.161
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: RDMAFSYYYV PEFPASQTGA VGPAGKQKGA AAGGRVAGGN RRVLGDIGNV VHANVLDGKI QLPAGINRPI TRSFGAQLLK KAQAEPSKNG LAVPPAARAA
101: LKPVARKVPV KPAAPRPEPA AKIVTASDEN RKPSEGGAPK ISRKKAVHTL TTVLNHRSKE ACVHDIDKLD SDNELAVVDY IDDIYKYYKV LQHECRPIDY
201: IGSQPEISLK MRAILTDWLV EVAHKFELMP ESLYLTMYAI DRFLSLQAAV PRRELQLVGM AAMLIACKYE ETWAPEVNDF ISIADNAYSR QQFLSMEKNM
301: LNSMEWNLTV PTPYVFLVRF AKAAGSDKEL EQMIFFFAEM ALMNYGLVTA RPSLVAASAV YAARCTLKRS PIWTETLKHH TGLTGLTEAQ LLEPARSLVK
401: AHAAAPESKL KAVYRKYSSE QYGRVALRPP AVAWLLKF
101: LKPVARKVPV KPAAPRPEPA AKIVTASDEN RKPSEGGAPK ISRKKAVHTL TTVLNHRSKE ACVHDIDKLD SDNELAVVDY IDDIYKYYKV LQHECRPIDY
201: IGSQPEISLK MRAILTDWLV EVAHKFELMP ESLYLTMYAI DRFLSLQAAV PRRELQLVGM AAMLIACKYE ETWAPEVNDF ISIADNAYSR QQFLSMEKNM
301: LNSMEWNLTV PTPYVFLVRF AKAAGSDKEL EQMIFFFAEM ALMNYGLVTA RPSLVAASAV YAARCTLKRS PIWTETLKHH TGLTGLTEAQ LLEPARSLVK
401: AHAAAPESKL KAVYRKYSSE QYGRVALRPP AVAWLLKF
001: MMTSRSIVPQ QSTDDVVVVD GKNVAKGRNR QVLGDIGNVV RGNYPKNNEP EKINHRPRTR SQNPTLLVED NLKKPVVKRN AVPKPKKVAG KPKVVDVIEI
101: SSDSDEELGL VAAREKKATK KKATTYTSVL TARSKAACGL EKKQKEKIVD IDSADVENDL AAVEYVEDIY SFYKSVESEW RPRDYMASQP DINEKMRLIL
201: VEWLIDVHVR FELNPETFYL TVNILDRFLS VKPVPRKELQ LVGLSALLMS AKYEEIWPPQ VEDLVDIADH AYSHKQILVM EKTILSTLEW YLTVPTHYVF
301: LARFIKASIA DEKMENMVHY LAELGVMHYD TMIMFSPSMV AASAIYAARS SLRQVPIWTS TLKHHTGYSE TQLMDCAKLL AYQQWKQQEE GSESSTKGAL
401: RKKYSKDERF AVALIPPAKA LLTGTESA
101: SSDSDEELGL VAAREKKATK KKATTYTSVL TARSKAACGL EKKQKEKIVD IDSADVENDL AAVEYVEDIY SFYKSVESEW RPRDYMASQP DINEKMRLIL
201: VEWLIDVHVR FELNPETFYL TVNILDRFLS VKPVPRKELQ LVGLSALLMS AKYEEIWPPQ VEDLVDIADH AYSHKQILVM EKTILSTLEW YLTVPTHYVF
301: LARFIKASIA DEKMENMVHY LAELGVMHYD TMIMFSPSMV AASAIYAARS SLRQVPIWTS TLKHHTGYSE TQLMDCAKLL AYQQWKQQEE GSESSTKGAL
401: RKKYSKDERF AVALIPPAKA LLTGTESA
Arabidopsis Description
CYCB1-1Cyclin-B1-1 [Source:UniProtKB/Swiss-Prot;Acc:P30183]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.