Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G068080.1 | Barley | plastid | 98.12 | 91.81 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 93.44 | 71.19 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 93.44 | 68.26 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 87.81 | 64.45 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 87.81 | 64.45 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 87.5 | 64.22 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 87.5 | 64.07 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 87.19 | 63.99 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 85.31 | 61.63 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 85.31 | 61.63 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 30.31 | 48.74 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.0 | 48.32 |
| Os05t0493500-00 | Rice | nucleus | 69.69 | 45.79 |
| Zm00001d010656_P001 | Maize | nucleus | 63.75 | 45.74 |
| EES18429 | Sorghum | mitochondrion | 65.0 | 45.22 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 63.44 | 44.81 |
| PGSC0003DMT400058457 | Potato | nucleus | 57.5 | 44.02 |
| AT2G26760.1 | Thale cress | nucleus | 51.25 | 42.38 |
| PGSC0003DMT400018480 | Potato | nucleus | 56.25 | 42.35 |
| Solyc01g009040.2.1 | Tomato | nucleus | 57.5 | 42.3 |
| Solyc10g078330.1.1 | Tomato | nucleus | 54.69 | 41.37 |
| KRH73516 | Soybean | nucleus | 56.56 | 41.14 |
| KRH14611 | Soybean | nucleus | 55.94 | 40.77 |
| Solyc06g073610.2.1 | Tomato | nucleus | 55.62 | 40.45 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 52.81 | 40.43 |
| PGSC0003DMT400015245 | Potato | nucleus | 55.31 | 40.32 |
| CDY69551 | Canola | nucleus | 44.38 | 40.0 |
| CDY62475 | Canola | nucleus | 43.44 | 39.6 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 55.31 | 39.07 |
| Bra002046.1-P | Field mustard | nucleus | 47.81 | 38.93 |
| KRH66715 | Soybean | nucleus | 47.5 | 38.78 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 55.31 | 38.31 |
| KRH66718 | Soybean | plastid | 44.38 | 38.07 |
| KRG95055 | Soybean | nucleus | 54.06 | 38.02 |
| Solyc10g080950.1.1 | Tomato | nucleus | 54.69 | 37.88 |
| PGSC0003DMT400072211 | Potato | nucleus | 54.38 | 37.5 |
| KRH66713 | Soybean | nucleus | 53.12 | 37.44 |
| AT3G11520.1 | Thale cress | nucleus | 48.12 | 37.2 |
| AT4G37490.1 | Thale cress | nucleus | 49.69 | 37.15 |
| Bra028741.1-P | Field mustard | nucleus | 48.12 | 37.11 |
| CDX69311 | Canola | nucleus | 48.12 | 36.75 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 47.5 | 36.72 |
| CDX75659 | Canola | nucleus | 48.12 | 35.98 |
| Bra011769.1-P | Field mustard | nucleus | 48.12 | 35.98 |
| CDX80988 | Canola | plastid | 47.5 | 35.51 |
| CDY11354 | Canola | plastid | 47.81 | 35.33 |
| KRG95056 | Soybean | cytosol | 42.5 | 35.14 |
| AT5G06150.1 | Thale cress | nucleus | 47.5 | 34.16 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 49.06 | 31.91 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 27.5 | 31.65 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 37.81 | 28.81 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 33.12 | 28.42 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 40.31 | 27.39 |
| CDY14091 | Canola | plastid | 48.44 | 23.63 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 32.5 | 22.91 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 28.75 | 22.17 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 35.0 | 22.09 |
| CDY04980 | Canola | nucleus | 48.12 | 21.45 |
| AT1G34460.5 | Thale cress | cytosol | 30.62 | 19.68 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G001680.1 | EnsemblPlantsGene:HORVU0Hr1G001680 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF267 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SEG:seg | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000B463770 | UniProt:A0A287DUH8 | MapMan:13.1.1.1.2 | : |
Description
No Description!
Coordinates
chrchrUn:-:7912837..7914547
Molecular Weight (calculated)
36137.8 Da
IEP (calculated)
7.010
GRAVY (calculated)
-0.151
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: RPEPAAKIVT ASDENRKPSE GGAPKISRKK AVHTLTTVLN HRSKEACVHD IDKLDSDNEL AVVDYIDDIY KYYKVAQHEC RPIDYMGSQP EISPKMRAIL
101: TDWLVEVTHK FELMPESLYL TMYAVDRFLS LQAVPRRELQ LVGMAAMLIA CKYEEIWAPE VNDFISIADN AYSRHQLLSM EKNMLNSMEW NLTVPTPYVF
201: LVRFAKAAGS DKELEEMIFF FAEMALMEYG LVTARPLLVA ASAVYAARCT LKRSPIWTET LKHHTGLTEA QLLEPARVLV MAHAAAPESK LKAIYSKYSS
301: EQYGRVALRP PAVAAPQRLA
101: TDWLVEVTHK FELMPESLYL TMYAVDRFLS LQAVPRRELQ LVGMAAMLIA CKYEEIWAPE VNDFISIADN AYSRHQLLSM EKNMLNSMEW NLTVPTPYVF
201: LVRFAKAAGS DKELEEMIFF FAEMALMEYG LVTARPLLVA ASAVYAARCT LKRSPIWTET LKHHTGLTEA QLLEPARVLV MAHAAAPESK LKAIYSKYSS
301: EQYGRVALRP PAVAAPQRLA
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Arabidopsis Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.