Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 97.34 | 97.1 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 92.98 | 78.05 |
| Os01t0281200-01 | Rice | nucleus | 73.37 | 71.63 |
| Zm00001d019469_P001 | Maize | extracellular | 23.49 | 67.83 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 56.9 | 59.34 |
| EES02793 | Sorghum | nucleus | 65.38 | 58.32 |
| Zm00001d008221_P001 | Maize | nucleus | 63.2 | 54.49 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 23.0 | 47.74 |
| Zm00001d020033_P001 | Maize | nucleus | 61.99 | 47.06 |
| Zm00001d020996_P001 | Maize | nucleus | 61.02 | 46.32 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 45.76 | 45.22 |
| PGSC0003DMT400018480 | Potato | nucleus | 45.52 | 44.24 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 48.67 | 44.18 |
| Solyc10g078330.1.1 | Tomato | nucleus | 45.04 | 43.97 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 47.7 | 43.49 |
| KRH66715 | Soybean | nucleus | 40.92 | 43.11 |
| AT3G11520.1 | Thale cress | nucleus | 43.1 | 43.0 |
| Bra002046.1-P | Field mustard | nucleus | 40.68 | 42.75 |
| PGSC0003DMT400015245 | Potato | nucleus | 45.28 | 42.6 |
| PGSC0003DMT400058457 | Potato | nucleus | 43.1 | 42.58 |
| CDY62475 | Canola | nucleus | 36.08 | 42.45 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 44.79 | 42.43 |
| CDY69551 | Canola | nucleus | 36.08 | 41.97 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 44.31 | 41.88 |
| KRG95055 | Soybean | nucleus | 46.0 | 41.76 |
| AT2G26760.1 | Thale cress | nucleus | 38.98 | 41.6 |
| Solyc01g009040.2.1 | Tomato | nucleus | 43.58 | 41.38 |
| Solyc06g073610.2.1 | Tomato | nucleus | 43.83 | 41.14 |
| KRH14611 | Soybean | nucleus | 43.58 | 41.0 |
| Bra028741.1-P | Field mustard | nucleus | 41.16 | 40.96 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 45.76 | 40.91 |
| Solyc10g080950.1.1 | Tomato | nucleus | 45.52 | 40.69 |
| CDX69311 | Canola | nucleus | 41.16 | 40.57 |
| KRH66713 | Soybean | nucleus | 44.55 | 40.53 |
| PGSC0003DMT400072211 | Potato | nucleus | 45.52 | 40.52 |
| KRH66718 | Soybean | plastid | 36.32 | 40.21 |
| CDX75659 | Canola | nucleus | 41.65 | 40.19 |
| Bra011769.1-P | Field mustard | nucleus | 41.65 | 40.19 |
| KRH73516 | Soybean | nucleus | 42.37 | 39.77 |
| AT4G37490.1 | Thale cress | nucleus | 41.16 | 39.72 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 38.98 | 38.89 |
| CDY11354 | Canola | plastid | 40.19 | 38.34 |
| KRG95056 | Soybean | cytosol | 35.84 | 38.24 |
| AT5G06150.1 | Thale cress | nucleus | 40.92 | 37.98 |
| CDX80988 | Canola | plastid | 39.23 | 37.85 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 37.29 | 36.75 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 35.84 | 35.15 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 27.84 | 31.08 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 18.16 | 30.74 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 27.84 | 30.42 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 23.73 | 25.79 |
| CDY14091 | Canola | plastid | 40.19 | 25.3 |
| TraesCS3D01G529100.1 | Wheat | plastid | 30.51 | 24.95 |
| TraesCS5D01G121100.2 | Wheat | plastid | 29.78 | 24.21 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 27.6 | 23.9 |
| CDY04980 | Canola | nucleus | 40.92 | 23.54 |
| AT1G34460.5 | Thale cress | cytosol | 28.33 | 23.49 |
| TraesCS3D01G164600.1 | Wheat | plastid | 28.81 | 23.33 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G195200.1 | EnsemblPlantsGene:TraesCS3D01G195200 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF211 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SEG:seg | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.2 | : | : |
Description
No Description!
Coordinates
chr3D:-:188863948..188866724
Molecular Weight (calculated)
45863.4 Da
IEP (calculated)
9.709
GRAVY (calculated)
-0.209
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRQAAAA ASDALAQEHK GDAKPVRRPK AAAGQQPAAR PRPALIDLSN RMSSRAALAV PNRPKAVAVA AVDNCRKAIK KQKENNRVKP EVIVISSDSE
101: NEKKNPGKRA TSWRAPPLTA ILTKCSRESD GVISSTKKVS ATYNIDKADA HNELAVVDYV EDIYRFYKST EGSSRPLCTY MSSQTDINER MRAILIDWLI
201: EVHHRLMLMP ETLYLTVYII DQYLSMENVL RKELQLVGVS AMLISCKYEE IWAPLVKELL VLSDNAFSRE QVLSTEKSIL NKLQWNLTVP TVYVFLLRYA
301: KAAMGDKELE NMAFFYAELA LVDYSMLVYS PSVTAAAAVY TARCTLNMSP GWSDILEHHT GLGESQLMQC ARRLASLHST AAGSSKQKVV YNKYANPKLG
401: AVSLYSPAKR LAI
101: NEKKNPGKRA TSWRAPPLTA ILTKCSRESD GVISSTKKVS ATYNIDKADA HNELAVVDYV EDIYRFYKST EGSSRPLCTY MSSQTDINER MRAILIDWLI
201: EVHHRLMLMP ETLYLTVYII DQYLSMENVL RKELQLVGVS AMLISCKYEE IWAPLVKELL VLSDNAFSRE QVLSTEKSIL NKLQWNLTVP TVYVFLLRYA
301: KAAMGDKELE NMAFFYAELA LVDYSMLVYS PSVTAAAAVY TARCTLNMSP GWSDILEHHT GLGESQLMQC ARRLASLHST AAGSSKQKVV YNKYANPKLG
401: AVSLYSPAKR LAI
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Arabidopsis Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.